Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30248g00010 ATGGCAAAAGGAAACAAAGGATGTGCCGTGGGAATTGACCTTGGTACAACATTCTCGTGTGTTGGTGCTTGGCTTCATCAGGAATCCCGGGTGGAAATCATAACTAACCAGCAAGGCAAAAGAACAACCCCTTCTGTTGTTGCTTTCACGAATACTGATATCTTGATTGGCGAAGCTGCTCGGAATCAGGCTGCTACCAACGCAGAGAATACTATCTTTGGTGCTAAGAGGTTAATTGGTAGGAAATGCAGCGATCCCACGGTTAAGAATGATTGTAAAACGTTGCCATTTAAGGTCGTAGCTAATAGTGATGATGAACCCAAGTTTGTTGTTAATCACCAGTTCGAGGAAAAGAAGTTTACTGCTGAGAGCATCTCATCCAAAATTGTGAAACATATGGGTGAGATAGCCACGGGGTTTATGGAGCAGGCAGTGAAAAAAGCAGTAATTACCGTGCCTGCTCATTTCAATGACTCTCAGCGTCAAGCCACCAAGAGAGCCGCAGCTCGTGCCGGCCTCGACGTTTTGCGGATAGTCAATGAACCCACAGCTGCAGCCATTGCATATGGTCTCTACAAGAGAGCTAACTCTGTTGAAGAGAGAAATATCTTCGTCTTCGACTTTGGAGGAGGTACTCTGGATGTGTCTCTCCTTGCCATTAAGCATAATGTGTTCATTGTTAAGGCAACATCCGGAGACACTCACTTAGGCGGAGAAGACTTCAACAACAACTTGCTCAATCACTTCATGAAAAGATTCAATACGAAGCACAATAAGGACATGAGCAAGGATCCAAGAGCCTTGAGCCGATTGAGAGCTGAATGCGAGAGAGTGAAACAAGATCTCTCATTCTCCAAGGAGGTAAACGTTCATGTGGATGCTTTGTTTCAGGGGATTGACTTCTCTGACAAGATCACTCAAGCTAAGTTTGAGGATCTCAACAAAGAACTCTTTGAAAATTGTAAGAAGATTGTAGAGAAGTGCTTCATTGATGCAAAAATCGAGAGGAGCAGTGTGCACGATGTGGTCCTTGTTGGTGGCTCTTCTAGGATTCCAAAGGTGAAGCAGATCTTGCAAGAGTTCTTCCCAGCTAAAGCCATACACAACAGCATCAATCCAGACGAAGCTATTGCTCATGGAGCAGCGTACTTGGCTGCAATGTTGAATGGAGACATTAAGAATGCCCCACAGCTGGTGCTTTCAGACGTTAATCCATTGTCTTTTGGAACCAACACCAGAGGAGATGTCATGGATGTGCTAATTCCAAGAAATACTCCCATTCCTGTTACCAAAACAATGGAATACGTTACAGTTAAAGATGACCAGACTGCGATCAGATTCAAAGTTTACGAGGGCGAAAGGAAGAAAGCCAGTGAAAACAATTTACTGGGTTCAGTTAGGCTAACTGGTCTTCCATCCGCTCCCCGTGGCTATGAAGTTAAGCTAACCTATACCATTGATGAAAATGGTATATTATCTGCCTGTTTAATGGATAAGAAGACTAACAAGAAGTGTAATCTTGTGATAACCGAAGACGACAAAGGGAAGTTGTCAACCGATGAGATTGCAGAAATGATTGAGAGTGCAGAGATTTTCAAGGATGAAGACGAGGAGCACGTCAAGAAGGCCAAAGCAAGGAACGCTTTGGATGATTACGTTTATGAAATGGAAAAGGCGTTGAAGGACAATCACGTCAGTTCTAAACTCAGCTCAGAGGATAAGGGCAAAATCAAACATGCAATTGATGAAGCCAAGAAAGTGATAGGCGCTAAACTTGATGAACAAGATAAGAGTGTATACAAAGATCATCTGAAGGCTGTTAAGAGCGTCTTTGAACCCATCAAGAAAAAGATTGGCTAG 1860 0.4339 MAKGNKGCAVGIDLGTTFSCVGAWLHQESRVEIITNQQGKRTTPSVVAFTNTDILIGEAARNQAATNAENTIFGAKRLIGRKCSDPTVKNDCKTLPFKVVANSDDEPKFVVNHQFEEKKFTAESISSKIVKHMGEIATGFMEQAVKKAVITVPAHFNDSQRQATKRAAARAGLDVLRIVNEPTAAAIAYGLYKRANSVEERNIFVFDFGGGTLDVSLLAIKHNVFIVKATSGDTHLGGEDFNNNLLNHFMKRFNTKHNKDMSKDPRALSRLRAECERVKQDLSFSKEVNVHVDALFQGIDFSDKITQAKFEDLNKELFENCKKIVEKCFIDAKIERSSVHDVVLVGGSSRIPKVKQILQEFFPAKAIHNSINPDEAIAHGAAYLAAMLNGDIKNAPQLVLSDVNPLSFGTNTRGDVMDVLIPRNTPIPVTKTMEYVTVKDDQTAIRFKVYEGERKKASENNLLGSVRLTGLPSAPRGYEVKLTYTIDENGILSACLMDKKTNKKCNLVITEDDKGKLSTDEIAEMIESAEIFKDEDEEHVKKAKARNALDDYVYEMEKALKDNHVSSKLSSEDKGKIKHAIDEAKKVIGAKLDEQDKSVYKDHLKAVKSVFEPIKKKIG 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30248g00010 619 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc30248g00010 619 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc30248g00010 619 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 397 550 IPR029047 -
Stsc30248g00010 619 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
Stsc30248g00010 619 Pfam Hsp70 protein 9 617 IPR013126 GO:0005524|GO:0140662
Stsc30248g00010 619 Gene3D - 546 619 IPR029048 -
Stsc30248g00010 619 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Stsc30248g00010 619 Coils Coil 268 288 - -
Stsc30248g00010 619 Gene3D - 10 386 - -
Stsc30248g00010 619 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc30248g00010 619 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc30248g00010 619 PRINTS 70kDa heat shock protein signature 477 493 - -
Stsc30248g00010 619 PRINTS 70kDa heat shock protein signature 339 355 - -
Stsc30248g00010 619 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc30248g00010 619 PRINTS 70kDa heat shock protein signature 397 416 - -
Stsc30248g00010 619 PRINTS 70kDa heat shock protein signature 371 391 - -
Stsc30248g00010 619 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc30248g00010 619 PRINTS 70kDa heat shock protein signature 211 221 - -
Stsc30248g00010 619 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 545 618 IPR029048 -
Stsc30248g00010 619 Gene3D - 194 368 - -
Stsc30248g00010 619 Gene3D Actin; Chain A, domain 4 238 320 - -
Stsc30248g00010 619 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Stsc30248g00010 619 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc30248g00010 619 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Stsc30248g00010 619 PANTHER HEAT SHOCK PROTEIN 70KDA 9 583 IPR013126 GO:0005524|GO:0140662
Stsc30248g00010 619 FunFam Heat shock 70 kDa 237 320 - -
Stsc30248g00010 619 Gene3D - 73 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30248g00010 Stsc-Chr30248 81937 84406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30248g00010 1 614 Calmodulin-binding Proteins AT3G12580 54.619 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30248g00010 K03283 - gmx:102667578 673.7