Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30248g00004 ATGCCTTCAAAATCCACCACCACAACCAGTTCATCAGAACGAAGATGGATCTACGATGTGTTCTTGAGTTTCAGGGGAACCGACACTCGCACTATCTTCATTTCTCATCTCTACAACTCCCTCACAACCGCAGGAATCTACGTTTTCAAGGACAACGAGGAGCTTCGCAAAGGAGGCCAGGTTTCATCGTTGCTCATGCAAGCAATCCAAGTTTCTAGAATCTCCATCATTGTTTTCTCAAAGAACTATGCCAACTCCAAGAGTTGTCTGAAAGAGCTGCAGAGAATTATGGATTGTCGAAGAACAATTGGCCAAGTTGTGGTTCCTGTTTTCTATAACGTAGAACCCTCTGATGTGCGTAATCAGAAAGGTGCCTTTGGAAGAAGCTTTCAGGATCTTAAAAAAAGAATTTCAAAGGAAAAAGCTCAACTTTGGGGTAATGCTCTTCGTGAAGCTGCTAATTTAACAGGATTTCACCTCAATAATTCTAGGAATGAAAGTGAAGATATCAATAAAATCATTGAAACTATCACTGATTCACTGGACAATACGATCTTGTTTGTTGCACAACATCCAGTTGGAGTACAACCTCGTGCCCAACATGTCATTAAACTGTTAAACTACCAACAATCAAAAGATGTTATGCTGTTAGGGATCTTGGGAATAGGAGGGATTGGGAAAACAACAATTGCCAAAGCCATTTACAATCAGATTCATCGCCATTTCGAGTCTTGTTGCTTCCTTTCAAACATCAGAGAATTTTGGGAGCAGAGTGCTACCAGTCAAGTGCATTTACAAGAAAGACTTCTTTCTGATGTTTACAGAACAACAAAGATCAAAATACATAGCATTGAATCAGGCATATTCATATTGCAACAAAGACTTCGACATAAAAGAACACTCGTCATACTTGATGATGTTGATAAGATAGAGCAGCTAAAGGCTTTGTGTGGAAGCCGCGAATGGTTCGGTCCGGGGAGCAGGATAATCATCACAACAAGAGATGAACATTTACTCAAACTGCTTCAAGTTGATCACATATCTAGAATGCCAGAAATGGACCGAGACGAATCTATTCAACATTTCAGTTGGCATGCATTCAAGCAACCAAGTCCCAGAGAAGATCTCGATCAGCTTTCGAGAAATGTTGTTGCATATTGTGGAGGACTACCTTTAGCTCTTGAGGTTATTGGGTCGTTTTTGTTTGATAAGAAAGTGAGGGAGTGGGAAAGTGTGGTGGAGAAGCTCAAAAGAATTCCAAATGATCAAGTACAGAGGAAGTTGAGAATAAGCTTTGATAATTTGAGTGATGATACAGAGAAAGAAATATTTCTTGACATTGCTTTTTTCTTTATTGGGATGGACCGAAATGATGTCATAAATATTTTAGATGAATTTGATGCTGGGATTGGAATCAGTGTTCTTGTAGATCGAAGCCTTGTCACAGTTGACAATAATAACAAGCTTGGAATGCATGATTTGCTACGAGATATGGGAAGAGAAATTGTTCGCGAGAAATCGCCAAAGGAGCCTGAGGAACGTAGCAGATTATGGTTGCAAAAAGATATTCTTCATGTATTGTCAAATAGTATGGGTACAAAAGCTATTGAGGGGTTGACTTTGAAGTTGCCGACAATAACCAATTCATCAGTTTATTTGGAGGCAAAAATGTTTGAGAATATGAAGAGACTTAGATTACTTCAACTTGCTGGTTTGCAACTAAATGGAAATTTTGAAGATCTTCCAAAACATCTAAGATGGCTTCATTGGCATGAATGCTATTTGAAATACATACCTTCCAACTTTGATCAAGCAAATTTAGTTTCCATTGAACTAGAATTCAGCAGTCTCAAGTTAGTTTGGAAAGAGGCCAAGTTCATGGAGAAGTTGAAAGTTCTAAATCTTAATCACTCTCATAACTTGACACAAACGCCAGACTTTTCATACTTGCCAAATCTTGAAAAGCTGTTACTCAAAGATTGTCCAAGCTTGTCTTCAATTTCAGACACCATAGGACATCTGAAAAGAATCCTTCTAATAAATTTGGAAGACTGCACAAGCCTTGGCAACCTGCCAAGAAGCATTTACAAGTTGAAATCTCTCAACACACTCATCATTTCCGGGTGCTCAATGATTGACAAATTAGAAGAAGATTTAGAGCAAATGAAATCCTTGGTAACTTTGATTGCAGATAAGACTGCAATAACACAAGTGCCATTTTCAATAGTAAGATCAAAGAGCATTGGATATGTTTCTTTATGTGGTTATGAAGGATTCTCGCGTGATGTGTTTCCTTCACTCATTTGGTCATGGATGTCACCAAGTAATGATCTCTCATCCATGGTTCAAGCATCTTCATCATCATCAGCAGTTATTCCCTTTGATTTACCAAAGCTTAGAAGTCTCTGGGTGGAGTGTGACTCTGATCTTCAATTAAATGGAGGTGTAGCAAGAATTTTGGCTACCTTATTTGCTACATACAACAAGGAACTTGAAGCAACACCAACTACATCACAAGTCTTGATGAATAATATCAAAGGTTCAGAAATATTTGATTTGAGAAATCAGTCTCACATTTCTGGATCACCCAAGTGTCTTGTAATTGAAGTTGGAATGAAGAGCCAAGTCACCAAAGTCCTTAAGGACATAATCTTACAGGGGATGAAGACTACAACCAATGAGTTTAATGATGATTGGTTCCTCAAAAGTGACAAGTATTGGTTAACATTCGGTTCCAAAAGTTCTTCTGTGGTTTTTGAAGTCCCTCAAGTGAATGGTTGTAACTTAAATTCAGTGACATTATGTATTCTTTATTCTTCTTCCTCAGAATGCCTTAAAAATGTGTTGATCATAAACTACACAAAGTCCACCATTCAAGTCTATAAACAAGACACACTAGCCTCTCTTGAAGATGAGGAGGGAAGACGCATAACCTCACATCTAGAACCTGGTAACAAAGTGGAGATTCTTGTTGTTGGTTACAAATTCATTGTGAAGAGAACAACAATTTTTCTGATATATGATGAACCGGTTGGCCAATATGCGGATGTTGTTGTTTCAAGTGACAAGTGCATTATTTCTAGTGATAACAATGATATGGAAGTTGATGAACATTCTAGTGTTTCTAGTGGTGGTCATGATAGAGCAAAGAAGAAATGTTCATGTTTTTATTGGTGTTGGGGATAA 3186 0.3804 MPSKSTTTTSSSERRWIYDVFLSFRGTDTRTIFISHLYNSLTTAGIYVFKDNEELRKGGQVSSLLMQAIQVSRISIIVFSKNYANSKSCLKELQRIMDCRRTIGQVVVPVFYNVEPSDVRNQKGAFGRSFQDLKKRISKEKAQLWGNALREAANLTGFHLNNSRNESEDINKIIETITDSLDNTILFVAQHPVGVQPRAQHVIKLLNYQQSKDVMLLGILGIGGIGKTTIAKAIYNQIHRHFESCCFLSNIREFWEQSATSQVHLQERLLSDVYRTTKIKIHSIESGIFILQQRLRHKRTLVILDDVDKIEQLKALCGSREWFGPGSRIIITTRDEHLLKLLQVDHISRMPEMDRDESIQHFSWHAFKQPSPREDLDQLSRNVVAYCGGLPLALEVIGSFLFDKKVREWESVVEKLKRIPNDQVQRKLRISFDNLSDDTEKEIFLDIAFFFIGMDRNDVINILDEFDAGIGISVLVDRSLVTVDNNNKLGMHDLLRDMGREIVREKSPKEPEERSRLWLQKDILHVLSNSMGTKAIEGLTLKLPTITNSSVYLEAKMFENMKRLRLLQLAGLQLNGNFEDLPKHLRWLHWHECYLKYIPSNFDQANLVSIELEFSSLKLVWKEAKFMEKLKVLNLNHSHNLTQTPDFSYLPNLEKLLLKDCPSLSSISDTIGHLKRILLINLEDCTSLGNLPRSIYKLKSLNTLIISGCSMIDKLEEDLEQMKSLVTLIADKTAITQVPFSIVRSKSIGYVSLCGYEGFSRDVFPSLIWSWMSPSNDLSSMVQASSSSSAVIPFDLPKLRSLWVECDSDLQLNGGVARILATLFATYNKELEATPTTSQVLMNNIKGSEIFDLRNQSHISGSPKCLVIEVGMKSQVTKVLKDIILQGMKTTTNEFNDDWFLKSDKYWLTFGSKSSSVVFEVPQVNGCNLNSVTLCILYSSSSECLKNVLIINYTKSTIQVYKQDTLASLEDEEGRRITSHLEPGNKVEILVVGYKFIVKRTTIFLIYDEPVGQYADVVVSSDKCIISSDNNDMEVDEHSSVSSGGHDRAKKKCSCFYWCWG 1061
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc30248g00004 1061 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 158 IPR035897 -
Stsc30248g00004 1061 PRINTS Disease resistance protein signature 294 308 - -
Stsc30248g00004 1061 PRINTS Disease resistance protein signature 625 641 - -
Stsc30248g00004 1061 PRINTS Disease resistance protein signature 216 231 - -
Stsc30248g00004 1061 PRINTS Disease resistance protein signature 387 401 - -
Stsc30248g00004 1061 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 183 - -
Stsc30248g00004 1061 Coils Coil 712 732 - -
Stsc30248g00004 1061 Pfam NB-ARC domain 200 422 IPR002182 GO:0043531
Stsc30248g00004 1061 SUPERFAMILY "Winged helix" DNA-binding domain 423 527 IPR036390 -
Stsc30248g00004 1061 Gene3D - 188 347 IPR027417 -
Stsc30248g00004 1061 Gene3D - 11 187 IPR035897 -
Stsc30248g00004 1061 SUPERFAMILY L domain-like 543 865 - -
Stsc30248g00004 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 447 IPR027417 -
Stsc30248g00004 1061 Pfam TIR domain 18 179 IPR000157 GO:0007165
Stsc30248g00004 1061 Gene3D - 353 436 IPR042197 -
Stsc30248g00004 1061 ProSiteProfiles TIR domain profile. 16 181 IPR000157 GO:0007165
Stsc30248g00004 1061 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 788 IPR044974 GO:0006952
Stsc30248g00004 1061 Gene3D Ribonuclease Inhibitor 533 883 IPR032675 -
Stsc30248g00004 1061 SMART till_3 17 155 IPR000157 GO:0007165
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc30248g00004 Stsc-Chr30248 21060 26135 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30248g00004 18 742 WRKY Transcription Factor Family AT4G12020 33.467 1.50e-87 308
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30248g00004 - - ahf:112749677 1308.89