LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30248g00004	ATGCCTTCAAAATCCACCACCACAACCAGTTCATCAGAACGAAGATGGATCTACGATGTGTTCTTGAGTTTCAGGGGAACCGACACTCGCACTATCTTCATTTCTCATCTCTACAACTCCCTCACAACCGCAGGAATCTACGTTTTCAAGGACAACGAGGAGCTTCGCAAAGGAGGCCAGGTTTCATCGTTGCTCATGCAAGCAATCCAAGTTTCTAGAATCTCCATCATTGTTTTCTCAAAGAACTATGCCAACTCCAAGAGTTGTCTGAAAGAGCTGCAGAGAATTATGGATTGTCGAAGAACAATTGGCCAAGTTGTGGTTCCTGTTTTCTATAACGTAGAACCCTCTGATGTGCGTAATCAGAAAGGTGCCTTTGGAAGAAGCTTTCAGGATCTTAAAAAAAGAATTTCAAAGGAAAAAGCTCAACTTTGGGGTAATGCTCTTCGTGAAGCTGCTAATTTAACAGGATTTCACCTCAATAATTCTAGGAATGAAAGTGAAGATATCAATAAAATCATTGAAACTATCACTGATTCACTGGACAATACGATCTTGTTTGTTGCACAACATCCAGTTGGAGTACAACCTCGTGCCCAACATGTCATTAAACTGTTAAACTACCAACAATCAAAAGATGTTATGCTGTTAGGGATCTTGGGAATAGGAGGGATTGGGAAAACAACAATTGCCAAAGCCATTTACAATCAGATTCATCGCCATTTCGAGTCTTGTTGCTTCCTTTCAAACATCAGAGAATTTTGGGAGCAGAGTGCTACCAGTCAAGTGCATTTACAAGAAAGACTTCTTTCTGATGTTTACAGAACAACAAAGATCAAAATACATAGCATTGAATCAGGCATATTCATATTGCAACAAAGACTTCGACATAAAAGAACACTCGTCATACTTGATGATGTTGATAAGATAGAGCAGCTAAAGGCTTTGTGTGGAAGCCGCGAATGGTTCGGTCCGGGGAGCAGGATAATCATCACAACAAGAGATGAACATTTACTCAAACTGCTTCAAGTTGATCACATATCTAGAATGCCAGAAATGGACCGAGACGAATCTATTCAACATTTCAGTTGGCATGCATTCAAGCAACCAAGTCCCAGAGAAGATCTCGATCAGCTTTCGAGAAATGTTGTTGCATATTGTGGAGGACTACCTTTAGCTCTTGAGGTTATTGGGTCGTTTTTGTTTGATAAGAAAGTGAGGGAGTGGGAAAGTGTGGTGGAGAAGCTCAAAAGAATTCCAAATGATCAAGTACAGAGGAAGTTGAGAATAAGCTTTGATAATTTGAGTGATGATACAGAGAAAGAAATATTTCTTGACATTGCTTTTTTCTTTATTGGGATGGACCGAAATGATGTCATAAATATTTTAGATGAATTTGATGCTGGGATTGGAATCAGTGTTCTTGTAGATCGAAGCCTTGTCACAGTTGACAATAATAACAAGCTTGGAATGCATGATTTGCTACGAGATATGGGAAGAGAAATTGTTCGCGAGAAATCGCCAAAGGAGCCTGAGGAACGTAGCAGATTATGGTTGCAAAAAGATATTCTTCATGTATTGTCAAATAGTATGGGTACAAAAGCTATTGAGGGGTTGACTTTGAAGTTGCCGACAATAACCAATTCATCAGTTTATTTGGAGGCAAAAATGTTTGAGAATATGAAGAGACTTAGATTACTTCAACTTGCTGGTTTGCAACTAAATGGAAATTTTGAAGATCTTCCAAAACATCTAAGATGGCTTCATTGGCATGAATGCTATTTGAAATACATACCTTCCAACTTTGATCAAGCAAATTTAGTTTCCATTGAACTAGAATTCAGCAGTCTCAAGTTAGTTTGGAAAGAGGCCAAGTTCATGGAGAAGTTGAAAGTTCTAAATCTTAATCACTCTCATAACTTGACACAAACGCCAGACTTTTCATACTTGCCAAATCTTGAAAAGCTGTTACTCAAAGATTGTCCAAGCTTGTCTTCAATTTCAGACACCATAGGACATCTGAAAAGAATCCTTCTAATAAATTTGGAAGACTGCACAAGCCTTGGCAACCTGCCAAGAAGCATTTACAAGTTGAAATCTCTCAACACACTCATCATTTCCGGGTGCTCAATGATTGACAAATTAGAAGAAGATTTAGAGCAAATGAAATCCTTGGTAACTTTGATTGCAGATAAGACTGCAATAACACAAGTGCCATTTTCAATAGTAAGATCAAAGAGCATTGGATATGTTTCTTTATGTGGTTATGAAGGATTCTCGCGTGATGTGTTTCCTTCACTCATTTGGTCATGGATGTCACCAAGTAATGATCTCTCATCCATGGTTCAAGCATCTTCATCATCATCAGCAGTTATTCCCTTTGATTTACCAAAGCTTAGAAGTCTCTGGGTGGAGTGTGACTCTGATCTTCAATTAAATGGAGGTGTAGCAAGAATTTTGGCTACCTTATTTGCTACATACAACAAGGAACTTGAAGCAACACCAACTACATCACAAGTCTTGATGAATAATATCAAAGGTTCAGAAATATTTGATTTGAGAAATCAGTCTCACATTTCTGGATCACCCAAGTGTCTTGTAATTGAAGTTGGAATGAAGAGCCAAGTCACCAAAGTCCTTAAGGACATAATCTTACAGGGGATGAAGACTACAACCAATGAGTTTAATGATGATTGGTTCCTCAAAAGTGACAAGTATTGGTTAACATTCGGTTCCAAAAGTTCTTCTGTGGTTTTTGAAGTCCCTCAAGTGAATGGTTGTAACTTAAATTCAGTGACATTATGTATTCTTTATTCTTCTTCCTCAGAATGCCTTAAAAATGTGTTGATCATAAACTACACAAAGTCCACCATTCAAGTCTATAAACAAGACACACTAGCCTCTCTTGAAGATGAGGAGGGAAGACGCATAACCTCACATCTAGAACCTGGTAACAAAGTGGAGATTCTTGTTGTTGGTTACAAATTCATTGTGAAGAGAACAACAATTTTTCTGATATATGATGAACCGGTTGGCCAATATGCGGATGTTGTTGTTTCAAGTGACAAGTGCATTATTTCTAGTGATAACAATGATATGGAAGTTGATGAACATTCTAGTGTTTCTAGTGGTGGTCATGATAGAGCAAAGAAGAAATGTTCATGTTTTTATTGGTGTTGGGGATAA	3186	0.3804	MPSKSTTTTSSSERRWIYDVFLSFRGTDTRTIFISHLYNSLTTAGIYVFKDNEELRKGGQVSSLLMQAIQVSRISIIVFSKNYANSKSCLKELQRIMDCRRTIGQVVVPVFYNVEPSDVRNQKGAFGRSFQDLKKRISKEKAQLWGNALREAANLTGFHLNNSRNESEDINKIIETITDSLDNTILFVAQHPVGVQPRAQHVIKLLNYQQSKDVMLLGILGIGGIGKTTIAKAIYNQIHRHFESCCFLSNIREFWEQSATSQVHLQERLLSDVYRTTKIKIHSIESGIFILQQRLRHKRTLVILDDVDKIEQLKALCGSREWFGPGSRIIITTRDEHLLKLLQVDHISRMPEMDRDESIQHFSWHAFKQPSPREDLDQLSRNVVAYCGGLPLALEVIGSFLFDKKVREWESVVEKLKRIPNDQVQRKLRISFDNLSDDTEKEIFLDIAFFFIGMDRNDVINILDEFDAGIGISVLVDRSLVTVDNNNKLGMHDLLRDMGREIVREKSPKEPEERSRLWLQKDILHVLSNSMGTKAIEGLTLKLPTITNSSVYLEAKMFENMKRLRLLQLAGLQLNGNFEDLPKHLRWLHWHECYLKYIPSNFDQANLVSIELEFSSLKLVWKEAKFMEKLKVLNLNHSHNLTQTPDFSYLPNLEKLLLKDCPSLSSISDTIGHLKRILLINLEDCTSLGNLPRSIYKLKSLNTLIISGCSMIDKLEEDLEQMKSLVTLIADKTAITQVPFSIVRSKSIGYVSLCGYEGFSRDVFPSLIWSWMSPSNDLSSMVQASSSSSAVIPFDLPKLRSLWVECDSDLQLNGGVARILATLFATYNKELEATPTTSQVLMNNIKGSEIFDLRNQSHISGSPKCLVIEVGMKSQVTKVLKDIILQGMKTTTNEFNDDWFLKSDKYWLTFGSKSSSVVFEVPQVNGCNLNSVTLCILYSSSSECLKNVLIINYTKSTIQVYKQDTLASLEDEEGRRITSHLEPGNKVEILVVGYKFIVKRTTIFLIYDEPVGQYADVVVSSDKCIISSDNNDMEVDEHSSVSSGGHDRAKKKCSCFYWCWG	1061

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30248g00004	1061	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	158	IPR035897	-
	Stsc30248g00004	1061	PRINTS	Disease resistance protein signature	294	308	-	-
	Stsc30248g00004	1061	PRINTS	Disease resistance protein signature	625	641	-	-
	Stsc30248g00004	1061	PRINTS	Disease resistance protein signature	216	231	-	-
	Stsc30248g00004	1061	PRINTS	Disease resistance protein signature	387	401	-	-
	Stsc30248g00004	1061	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	183	-	-
	Stsc30248g00004	1061	Coils	Coil	712	732	-	-
	Stsc30248g00004	1061	Pfam	NB-ARC domain	200	422	IPR002182	GO:0043531
	Stsc30248g00004	1061	SUPERFAMILY	"Winged helix" DNA-binding domain	423	527	IPR036390	-
	Stsc30248g00004	1061	Gene3D	-	188	347	IPR027417	-
	Stsc30248g00004	1061	Gene3D	-	11	187	IPR035897	-
	Stsc30248g00004	1061	SUPERFAMILY	L domain-like	543	865	-	-
	Stsc30248g00004	1061	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	181	447	IPR027417	-
	Stsc30248g00004	1061	Pfam	TIR domain	18	179	IPR000157	GO:0007165
	Stsc30248g00004	1061	Gene3D	-	353	436	IPR042197	-
	Stsc30248g00004	1061	ProSiteProfiles	TIR domain profile.	16	181	IPR000157	GO:0007165
	Stsc30248g00004	1061	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	788	IPR044974	GO:0006952
	Stsc30248g00004	1061	Gene3D	Ribonuclease Inhibitor	533	883	IPR032675	-
	Stsc30248g00004	1061	SMART	till_3	17	155	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30248g00004	Stsc-Chr30248	21060	26135	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30248g00004	18	742	WRKY Transcription Factor Family	AT4G12020	33.467	1.50e-87	308

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30248g00004	-		-	ahf:112749677	1308.89