Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30248g00002 ATGTCTTTTAACCCCCAATCCACATTCAATAATCCCTACAGAACAATGATGTATGACGTGTACATTAGTTTCGAGCTCCATTACCCTTCCCATCCTTTCATTTCACTTCTCTCCGCCGCTCTCAAACGTGCTGGACTCCATCTCTTTCTTGACAATTACATCAAGCCAAAGAGTAAAGACCTTATACTATCCACCGTAATCAAAGGATCTCGAGTTTCTATCATAGTTTTCACAACGGATTTTGCTTCTACAACCTGGAGTTTGAAGGAGCTCGAGAAAATAATGGAGTGTCGCAGCAGCAAACGTCAGGTGGTTGTGCCTGTGTTCTATGAAGTAGATCCCTTGGAAGTACTCAATAAAATTTCGGAGAAGCGTTGTTGGATACTCTGGAAAGAACTTCAACCAATCAAGCCAAAGGATAGAAGCAAAAACATAGATAGTATTGTTGGCCATGTTACCTCTTTGCTAGATTCAACAGCCTTATTTGTTGCAGAGCATCCGGTGGGAGTAAACTCTCACGTGCATGATTTGATTCAACTGTTAGATAGTAAGAAATCGGATGGTGTTCTCATAATGGCAATATGGGGAATGGGCGGAATCGGTAAAACAACAGTTGCCAAGGCTCTCTACAATCAAATTAGTCACAATTTTGATGTGAGGAAATTCGTCCCGGACATCGACGAAAGGATGGAGGATTTTCCAAGAAGGTGGCCCATGGGCATGATAGAAGAGGAGATTCTTTTGTTTCTTAAAGAACAAGTTGCCAAAAAAGCAAGTAATTTTGACTCAACAAGGGTTATCTGGTGGGAAGGAATTCGTTGTGTAAAGGTATTACTTGTACTTGACAATGTGAGAAGTGAAAAGGAGTTGGAGGTTTTGCCAGTAACTTGTGAATGCTTTGGTCCTGGGAGTATAATCATCATTACCACAAGGATTAAACATGATCGGTTTAATGAGACTGGAATTGATCATGTATACAGAGTGAAAGAAATGGATTTCAAAGAAAGTGTTGAGCTTTTTAGTTGGAGTGCTTTCAAGAAAGAAACTCCTGAAAGGACTTATGGCAGTCTAGTTAATCGTGCACTTGAATATTCTGATGGGTTGCCGCTAGCTCTTGTGGCGGTTGGTTCTGTATTATCAGAAAGAAGTAGAGCAGAGTGGGAGAGTTTATTGGATAGGCTTAAAAGATTTCCCCTTGAAGATGTTTGGCAAGTTTTAAGAAAAAGTATTGATTCTTTGGGATATGATATGAAGCAAATGTTTCTTGTTCTAGCTTATTTGAGTCATTTCTTTATCGGAATGGACCGAAGTCATGTAAATCAATTATTACAAAAAGCTGGAGGAGATGTTGCACTAAAAGCACTTAAAGGGCTTGAAGATCATAGTCTTGTGTCTTTTGAGGACGACAAGTTTTGCATGAATCGTTTGATACAAGACATTGGAAGAGAAATGTATCTGGAACAATCCTCTATGAAACCTCAGCAAAGGCCTTATGATGTATTCTTGAGCTTTCGAGGCAAAGACACTCGTTCCAGTTTTGTGTCACATCTTCATGCATCTCTGGAAAATGCTGGTATCTATGTTTTCAAGGATGATGGTGGGGTTGAAAGAGGGGAAAATGTCTTAATCTCACTTCTGAAAGCAATTGGAGAGTCTAGAATTTCAATCATCATTTTGTCACCAAATTATGCAGGTTCAAAATGGTGTTTGCAAGAGTTGGAAGACATAATGAGATGTCATAATAATAAAACTCAACAGGTGTTGCCAGTGTTCTACCATGTTGATCCATCGGAGGTGCGAAATCAAGCTGATAAATTCGGAGAGGCTTTTGAAGAATTTATAAAGAAAAACCCCCAAAATAGAGACAGAGAGCAGGATTGGAGGAAAGCACTCCGAGATGTTGGTTCCACTGCCGGATTTGTTGTTCAAAATTTGAGGAATGAAAATGAGGATATTAAGAAGATTGTTGAACAAGTTACTCATATGCTAGACATGGATGAATTGTTTGTTGCTAATCATCCAGTAGGAGTAGAATCTCGTGTAGAAGAGCTGATTGAACTATTTAAAAACCATCAATCAGAAGATCCTCTACTATTAGGCATATGGGGCATGGGAGGGATTGGTAAAACAACCATTGCCAAGGCAGTTTATAATAAAATTTGGCGTCAGTTTGATGGTCGATGTTTCCTCTTAAATATCAGGGAAGCTTGGGAGCAAGATAACGGCGGCCTTCATTTGCAGCAGCAACTTCTTTCTTCTGTCTATAAGTCAACAAAAATAAAGATACAGAACATGGAAAGTGGAAAATCAATATTAGAGAAAAGGCTTGGACAGAAAAGAATACTTCTTGTACTTGATGATGTGGATAAATTGGAGCAACTGAATGCTTTGGCAGCAAGCCATGAATGGTTCTGTCCAAGGAGTATAATAATCATCACAACAAGAGATGAAGGACTTCTTAGCTGCCTTAAAATTGATAGAAGATATAAAATGGAAGGGTTGAATGAGGAAGAATCTGTTGAACTTTTCAGTTGGCATGCATTCAAAGAACCACGTCCTAGGGAAAATTTCGCCGAGCTTTGTGGTGAAGTTATTTCCTATTGCGGGAGTGTGCCATTAGCTCTTGAGGTTATTGGTTCCCATTTGTTTGAAAGGGGAACAGAAGAGTGGAAGAGTGCTTTGAACAAACTCAAAAGCATTCCCAATAAAGAAGTACAGAAGAAGCTTAAGATAAGCTTTGATGGTTTAAGTGATGACAAAGATAGAGAAATATTCCTTGATATAGCTTTTTTCTTTATTGGAATGGATAAAAATGATGTAACTGATATACTAAATGGTTGTGGACATTCTGCTGAAATTGGAATAAGTATTCTTTTGGAGAGATGTCTTGTAACTGTTGACTCTAAGAATAAACTTCGAATGCATGGTTTGCTAAGAGACATGGGAAGAGAAATCATTCGCGAGAGTTCTCCAACAGCACCTGAAGAGCGTAGTAGGTTATGGCATTCAGAGGAGGTGCTTGATGTATTAATCAAAGAACTGGGAACAAAAGCCACTGAGGGAATTGCGTTGAATTTATCAAGGATGAACCCAATTCGTTTGAAGATCGAAGCATTTAAGTACATGAGGAGACTCAGATTACTTCAACTTGCTGGTGTGAAACTCGACGGAGACTACAAACACCTTTCAACAGACCTTCGATGGCTATGCTGGCACGGATGCCCTTCAAGATATACAAATGCAAACTTTGATCAAAGAAATTTGGTTGCCATTGACTTAAAGTATAGCTATCTTCAACATGTATGGAAGAAGGGCCAGATGATGAATAAACTGAAAATTCTCAATCTTAGTCATTCTGAACACTTGACACATACCCCAGACTTTTCATACTTGCCCAATCTTAAGAAGTTAATACTCAAAGATTGTCCAAGTTTGTCTTCAATCTCCCATACCATTGGTGATCTCAAACAAATTCTTCTAATCAACTTGAAAGATTGTAAAAGGCTTCAAGTGCTTCCGAAAAGCATCTACAAATTAAAATCCCTCAAAACCCTCATTCTGTCTGGGTGTACAAAGATTGACAAATTGGAAGAGGACTTGGAACAAATGAAATCTTTGACAGCATTGATGGCAGATAACACTGCTATAACCAAAGTTCCCTATGCACTACCAAGACTAAACAACCTTGCTTACATTTCTTTGTGTGGGTTTGAAGGGTTGTCTCGAAATGTGTTTCCTTCAATCATCTGGTCATGGACCTCTCCAACAAATAATCTCTCACCCCAAATGCATTCGAATTTGGACTTGTCGAATCTTGTTTCCATAATGGTACCAAATAGCAGAAGTTCCCATGCAGGCCTATCATCCATCATCAAAGAGCTTCCAAAGGTTCAGAATCTTCAACTGGAATGTGGCTCACAACTTAAAATCTCAGTAAGTGTAAATTTAGGTGCTACACCAAGAACATCACATGTCTCAAATATGAATTCCTCAGCATTAGGTGGTTCTTGCAGTAAAGGTGACATTTCTAGATCAGAAAATTCCTTGAATTTCATTTTAATCCAAATGGGAATGAATTGCTTAAGCACAAAAGAACTCAGTGATAGCATTTTACAGAAGTTTAATAGCAGTTTAGCTGGAAATTGTTTGCTTCCTGCGAACGAGAATCCTGATTGGTTAAGTTTCAACAGTGAAGGTTCTTCTGTGAGTTTTGAAGTTCCACAAGTTAATGGCCGTAGCTTGAAGGGAGTGATATTGTGCATCATATACTCTTCTTCCTCAAACATCATAGCATCTGAAGGAATAATTCTAAAGAATATGATGATCATAAATTACACAAAAGCCACCTCTCATGTCTATGAGGGAGATACCCTGGCTTCACTTAAGAATAAAGACTGGCAGAGTGTCTTATCAAATCTTGAAGCAGGTGACAAAGTTCAGGTTGTTGCTGTTGTTTTGGGGTATGGATTCACAGTGAAGAAAACTATAGTTTCTCTCATATATGGTGATCCAATTGACCAAACCATGGAGGAAAAGGATGAAGGTATTGTTTCTGGTGATGAAATGTTAGCAGATGAGAATGTAACTGTCCATGGTGGAGATGAAAATGAAGAATTTAAACTCCTTAGAAAGAGAAAATTCCAAGAGTATGATGATTGA 4659 0.3857 MSFNPQSTFNNPYRTMMYDVYISFELHYPSHPFISLLSAALKRAGLHLFLDNYIKPKSKDLILSTVIKGSRVSIIVFTTDFASTTWSLKELEKIMECRSSKRQVVVPVFYEVDPLEVLNKISEKRCWILWKELQPIKPKDRSKNIDSIVGHVTSLLDSTALFVAEHPVGVNSHVHDLIQLLDSKKSDGVLIMAIWGMGGIGKTTVAKALYNQISHNFDVRKFVPDIDERMEDFPRRWPMGMIEEEILLFLKEQVAKKASNFDSTRVIWWEGIRCVKVLLVLDNVRSEKELEVLPVTCECFGPGSIIIITTRIKHDRFNETGIDHVYRVKEMDFKESVELFSWSAFKKETPERTYGSLVNRALEYSDGLPLALVAVGSVLSERSRAEWESLLDRLKRFPLEDVWQVLRKSIDSLGYDMKQMFLVLAYLSHFFIGMDRSHVNQLLQKAGGDVALKALKGLEDHSLVSFEDDKFCMNRLIQDIGREMYLEQSSMKPQQRPYDVFLSFRGKDTRSSFVSHLHASLENAGIYVFKDDGGVERGENVLISLLKAIGESRISIIILSPNYAGSKWCLQELEDIMRCHNNKTQQVLPVFYHVDPSEVRNQADKFGEAFEEFIKKNPQNRDREQDWRKALRDVGSTAGFVVQNLRNENEDIKKIVEQVTHMLDMDELFVANHPVGVESRVEELIELFKNHQSEDPLLLGIWGMGGIGKTTIAKAVYNKIWRQFDGRCFLLNIREAWEQDNGGLHLQQQLLSSVYKSTKIKIQNMESGKSILEKRLGQKRILLVLDDVDKLEQLNALAASHEWFCPRSIIIITTRDEGLLSCLKIDRRYKMEGLNEEESVELFSWHAFKEPRPRENFAELCGEVISYCGSVPLALEVIGSHLFERGTEEWKSALNKLKSIPNKEVQKKLKISFDGLSDDKDREIFLDIAFFFIGMDKNDVTDILNGCGHSAEIGISILLERCLVTVDSKNKLRMHGLLRDMGREIIRESSPTAPEERSRLWHSEEVLDVLIKELGTKATEGIALNLSRMNPIRLKIEAFKYMRRLRLLQLAGVKLDGDYKHLSTDLRWLCWHGCPSRYTNANFDQRNLVAIDLKYSYLQHVWKKGQMMNKLKILNLSHSEHLTHTPDFSYLPNLKKLILKDCPSLSSISHTIGDLKQILLINLKDCKRLQVLPKSIYKLKSLKTLILSGCTKIDKLEEDLEQMKSLTALMADNTAITKVPYALPRLNNLAYISLCGFEGLSRNVFPSIIWSWTSPTNNLSPQMHSNLDLSNLVSIMVPNSRSSHAGLSSIIKELPKVQNLQLECGSQLKISVSVNLGATPRTSHVSNMNSSALGGSCSKGDISRSENSLNFILIQMGMNCLSTKELSDSILQKFNSSLAGNCLLPANENPDWLSFNSEGSSVSFEVPQVNGRSLKGVILCIIYSSSSNIIASEGIILKNMMIINYTKATSHVYEGDTLASLKNKDWQSVLSNLEAGDKVQVVAVVLGYGFTVKKTIVSLIYGDPIDQTMEEKDEGIVSGDEMLADENVTVHGGDENEEFKLLRKRKFQEYDD 1552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30248g00002 1552 SUPERFAMILY L domain-like 973 1304 - -
Stsc30248g00002 1552 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 132 IPR035897 -
Stsc30248g00002 1552 Coils Coil 1193 1213 - -
Stsc30248g00002 1552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 424 IPR027417 -
Stsc30248g00002 1552 Gene3D - 331 421 IPR042197 -
Stsc30248g00002 1552 Pfam NB-ARC domain 172 413 IPR002182 GO:0043531
Stsc30248g00002 1552 Pfam NB-ARC domain 678 908 IPR002182 GO:0043531
Stsc30248g00002 1552 Gene3D Ribonuclease Inhibitor 1003 1245 IPR032675 -
Stsc30248g00002 1552 ProSiteProfiles TIR domain profile. 496 663 IPR000157 GO:0007165
Stsc30248g00002 1552 ProSiteProfiles TIR domain profile. 16 149 IPR000157 GO:0007165
Stsc30248g00002 1552 Pfam TIR domain 18 152 IPR000157 GO:0007165
Stsc30248g00002 1552 Pfam TIR domain 498 661 IPR000157 GO:0007165
Stsc30248g00002 1552 Gene3D - 157 317 IPR027417 -
Stsc30248g00002 1552 PRINTS Disease resistance protein signature 698 713 - -
Stsc30248g00002 1552 PRINTS Disease resistance protein signature 775 789 - -
Stsc30248g00002 1552 PRINTS Disease resistance protein signature 868 882 - -
Stsc30248g00002 1552 PRINTS Disease resistance protein signature 1177 1193 - -
Stsc30248g00002 1552 SUPERFAMILY Toll/Interleukin receptor TIR domain 489 640 IPR035897 -
Stsc30248g00002 1552 SMART till_3 17 155 IPR000157 GO:0007165
Stsc30248g00002 1552 SMART till_3 497 637 IPR000157 GO:0007165
Stsc30248g00002 1552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 928 IPR027417 -
Stsc30248g00002 1552 Coils Coil 642 662 - -
Stsc30248g00002 1552 Gene3D - 669 828 IPR027417 -
Stsc30248g00002 1552 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 498 1311 IPR044974 GO:0006952
Stsc30248g00002 1552 SMART AAA_5 695 823 IPR003593 GO:0016887
Stsc30248g00002 1552 SMART AAA_5 188 332 IPR003593 GO:0016887
Stsc30248g00002 1552 Gene3D - 833 917 IPR042197 -
Stsc30248g00002 1552 Gene3D - 12 156 IPR035897 -
Stsc30248g00002 1552 FunFam Disease resistance protein (TIR-NBS-LRR class) 494 665 - -
Stsc30248g00002 1552 Gene3D - 495 668 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30248g00002 Stsc-Chr30248 4583 11722 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30248g00002 10 496 WRKY Transcription Factor Family AT4G12020 26.471 1.60e-25 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30248g00002 - - ahf:112749517 2601.62