Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30247g00024 ATGTGGTGTTTGTTAATTTGCGACATGAATGTGTCACATGCTTGTGCAATGGATGGTGACCCTCTAAGTTGTGTAGGTAGTGATGGCACTATGGATGGTGGTTCATCTAGCCAAACGGAACTGCAATCAACCACAGAAATAAAAGTTCCCAAGTTCAGTTTTCCAAATCCTTGTAAATCAATTCCTGCAGGTTCTCATAATTCTCAATCCAAGAAACCCTTTGCGGCTGGAATTCCTGGCATGAATAACTTAAAGAATTCTCATGTTCTTGGTGGTGGACTCTTAGAGAATGGGGGTACCACTTTTGGATCTGATTGTGTTAATAAAGCTTTTACTACTGTTACAACATCTCAATCTCCCGCGGTGGATGAAAAATGGGGGAATGTTAGAAAGTTCCATTCTAGTGGCACCAAGAGGGATTATGTTCTTCGACAAAAATCATTTCATGTGGAAAAGAATTATCGGACTTATGGATCTAAAGGGTCTTCAAGAGGAGGGAGGCTGAGTAGCTTTGGTAGTTTAATCTTGGATAAAAAACTTAAATCCGTGTCAGAGTCTTCTACAATAAATTTAAAGAGTGCATCCTTACAGATAAGTAAGGCAATGGGGGTTGATGTGATTCAAGACAATAATGCTAATTTCTCATCCTCTTCCGGACCATCTGTCTCGACTTCATTCCGGTTGGATTCCGCTCCTGATGTGATCTCTAGATCAACCAATAATTCATATTCAGTACATTCAGCAAATACTCTGCCTGCATTCAGTAGCCCAGCTCCTTTATCAGCTACAGATACCGATCTTTCTCTTTCATTGTCCTCAAGAATCAAGTCCTCTCCGGCACCCGTCTACTTCAATAAGGAGGCACCTAGTAGTAGTCATGTGGGTTTATCATCTGACAAACCCCTGGGCCAATGGGTACCCCAAGATAGAAAGGATGAAATGATTTTGAAGCTGGTTCCAAGGGTTCGTGATNNNNNNNNNNTTCAAGAATGGACTGAATGGGCCAATCAAAAGGTTATGCAGGCTGCTCGTCGGCTGGGTAAGGATAAGGCTGAACTCAAGACACTTAGACAAGAGAAAGAGGAAGTTGAGCGTCTTAAGAAAGAGAAACAATCTCTGGAAGAAAACACCATGAAGAAGCTCTCCGAGATGGAAAATGCCTTATGTAAAGCAAGTGGACAGGTAGAGCGAGCTAATGCTGCTGTTAGGAAGCTAGAGGTTGAGAATGCTGCTCTAAGGAGAGAGATGGAGGCTGCTAAACTTCGCGCTGCAGAAACTGCCGCAAGCTGTCAAGAGGTCTCAAAAAGGGAAAAGAAAACCCAAATGAAGTTTCAGTCATGGGAGAAACAGAAATCCTTGTTTCAGGAAGAGCTAGTTACCGAAAAACGTAGATTGGCGCAGCTGCTGCAGGAACTAGAGCAATCTAAGGTGCAACAGGAACAAGCTGAGGCTAGATGGCAGCAAGAAGCAAAGGCGAAAGAAGAACTACTTCTACAGGCCACTTCTATAAGAAAGGAAAGGGAACAGATTGAGGAGTCAGCAAAATCCAAGGAGGATATGATCAAATTGAAAGCAGAGAGAAATCTGCTGAAGTACAGAGATGATATCCATAAACTCGAAAAGGAGATTGCGCAGCTGAGATTGAAGACCGACTCTTCCAAAATCGCTGCACTGAAAATGGGCATTGATGGAAGCTATGCTGGCAGTTTCTCGGACCTCAAAAATGGTGCTTCCATGGGAGGGCCCCGGACTTCTTTTATATCAGAGCTAGTCAGTGACTACTCAGTGACATCCGGTGGTGTCAAACGCGAACGCGAGTGTGTGATGTGCCTCTCGGAAGAGATGTCCGTCGTCTTCCTTCCCTGTGCACATCAGGTTGTTTGCACAACATGCAATGAGCTCCATGAGAAGCAAGGTATGCAAGATTGCCCTTCTTGCAGGAGCCCCATCCAGCGGCGTATCCCCGTTCGTTATACACATACATAA 1986 0.4391 MWCLLICDMNVSHACAMDGDPLSCVGSDGTMDGGSSSQTELQSTTEIKVPKFSFPNPCKSIPAGSHNSQSKKPFAAGIPGMNNLKNSHVLGGGLLENGGTTFGSDCVNKAFTTVTTSQSPAVDEKWGNVRKFHSSGTKRDYVLRQKSFHVEKNYRTYGSKGSSRGGRLSSFGSLILDKKLKSVSESSTINLKSASLQISKAMGVDVIQDNNANFSSSSGPSVSTSFRLDSAPDVISRSTNNSYSVHSANTLPAFSSPAPLSATDTDLSLSLSSRIKSSPAPVYFNKEAPSSSHVGLSSDKPLGQWVPQDRKDEMILKLVPRVRDXXXXQEWTEWANQKVMQAARRLGKDKAELKTLRQEKEEVERLKKEKQSLEENTMKKLSEMENALCKASGQVERANAAVRKLEVENAALRREMEAAKLRAAETAASCQEVSKREKKTQMKFQSWEKQKSLFQEELVTEKRRLAQLLQELEQSKVQQEQAEARWQQEAKAKEELLLQATSIRKEREQIEESAKSKEDMIKLKAERNLLKYRDDIHKLEKEIAQLRLKTDSSKIAALKMGIDGSYAGSFSDLKNGASMGGPRTSFISELVSDYSVTSGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRSPIQRRIPVRYTHT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30247g00024 661 Coils Coil 493 513 - -
Stsc30247g00024 661 Coils Coil 339 383 - -
Stsc30247g00024 661 PANTHER OS05G0141500 PROTEIN 1 656 IPR046934 -
Stsc30247g00024 661 SUPERFAMILY RING/U-box 602 655 - -
Stsc30247g00024 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 657 IPR013083 -
Stsc30247g00024 661 Coils Coil 522 549 - -
Stsc30247g00024 661 Pfam Zinc finger, C3HC4 type (RING finger) 604 652 - -
Stsc30247g00024 661 CDD RING-HC_MIP1-like 602 656 - -
Stsc30247g00024 661 Coils Coil 395 429 - -
Stsc30247g00024 661 ProSiteProfiles Zinc finger RING-type profile. 607 647 IPR001841 -
Stsc30247g00024 661 Coils Coil 451 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30247g00024 Stsc-Chr30247 115119 118376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30247g00024 607 656 C3H Transcription Factor Family AT1G73950 44.000 2.12e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30247g00024 - - gmx:100785921 825.083