Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30247g00016 ATGTCTTCTGCTCATCATTCTGCTTTATCCGCCATGGCCATTGAACCTTCGTCTGCGCCCGCTGCCGGTTCCTCCGCCTCCGGCAATGATGGATTTCAAAGCAAACAAAGAGAGCATGAAGCAAAGCAGAGATCCATAATAAGGTCTCTAAGGAGACTAACTGCCCTCTCAACTGGCTCAATTCCAGATGTGGAACCTCCAACAAGAACTGAGGATGTCTGTGTATCTACAACTACTACTACAAGGAGTTGGCCAAGTCCAAGAACCGCAACCTCTTCTTCTTCTTCCAACGTCGTCAGCCCCAAAGTCGCTAGCCCCAAAGTCGTCAGCCCTTCTAACTCAGGGGAGCAGCAGGATTTAAAAGGCAACAATAACAATAACAGTAATTGGAATGGCATTGTTAGTATTCTGAAGAAAGGATCCCAGATGCCCCTCCATACCTTAAACACAATCAAGGATGTTCCTTATTTCAAAAGGAGAACAAACGAACGAATCCCAGAGGAATTCAGTGCAATGATCAAACCAGGAACATCTCTTAATCCTGAGGCTTATCGTTTTAAATCCTCCTGGAAAGTATTCTCTCTCTCGGATATCCAAGCCGCGACCAATAATTTCAGTCGTGAGAATTTGATTGGGCAAGGAGGTTATGCTGAGGTTTACAAAGGCCAATTGGAAGATGGAAACTTTGTAGCAATTAAAAGGCTAACAAGAGGGGACCAAGAAGAAATGACTTCAGATTTTTTGTCTGAGCTTGGGATCATAGTGCATGTGGACCACCCCAATATTGCTAAATTGATTGGATATGGAGTTGAAGGTGGAATGCATCTTGTTCTTCAGTTGTCTCCACATGGCAGCCTAGCTTCCATACTTTATGGACCCAGAGAGAAACTGGATTGGAGCACCAGGTATAAGATTGCAGTGGGGACTGCTGAGGGCCTCTACTATCTGCATGAACAATGTCAAAGAAGGATCATTCATAGAGATATCAAAGCTGCTAACATATTGCTTTCAGAGGATTTTGAGCCACAGATAGCTGATTTTGGACTATCCAAATGGTTACCTGAGAAATGGACTCACCATACTGTCTCCAAAGTAGAAGGCACATTCGGTTACCTTCCTCCTGAATACTTCATGCATGGTATTGTTGATGAAAAAACTGATGTTTTTGCTTATGGAGTGCTATTATTGGAGCTCATTACCGGTCGTCCAGCATTGGACAGTGCTCAGAAAAGTCTAGTGATGTGGGCAAAACCACGGATATCCCAGAGCAAAATGGAGGAGCTTATTGATCCATGTCTTGCTGGTGCCTATGACGAAGAGCAGATGAAATATATAATCTTAACAGCTGGTTTGTGCATAGAGGAGTCGACGATTCGACCCCGAATGCACCAAGTTTTGCAGATATCAAAAGGGGAAGAAGGCAGCATGGAGTTAGCTAGGGAACTCATGGAACCTTTATCTGGTGATGATTTCATTGAAGAAGAGTTCCCCTCACCTCACACTTCCAATGACATATCCAAACTTTTGGAGACTCTTGAACAAGATTAA 1548 0.438 MSSAHHSALSAMAIEPSSAPAAGSSASGNDGFQSKQREHEAKQRSIIRSLRRLTALSTGSIPDVEPPTRTEDVCVSTTTTTRSWPSPRTATSSSSSNVVSPKVASPKVVSPSNSGEQQDLKGNNNNNSNWNGIVSILKKGSQMPLHTLNTIKDVPYFKRRTNERIPEEFSAMIKPGTSLNPEAYRFKSSWKVFSLSDIQAATNNFSRENLIGQGGYAEVYKGQLEDGNFVAIKRLTRGDQEEMTSDFLSELGIIVHVDHPNIAKLIGYGVEGGMHLVLQLSPHGSLASILYGPREKLDWSTRYKIAVGTAEGLYYLHEQCQRRIIHRDIKAANILLSEDFEPQIADFGLSKWLPEKWTHHTVSKVEGTFGYLPPEYFMHGIVDEKTDVFAYGVLLLELITGRPALDSAQKSLVMWAKPRISQSKMEELIDPCLAGAYDEEQMKYIILTAGLCIEESTIRPRMHQVLQISKGEEGSMELARELMEPLSGDDFIEEEFPSPHTSNDISKLLETLEQD 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30247g00016 515 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 282 483 - -
Stsc30247g00016 515 MobiDBLite consensus disorder prediction 71 128 - -
Stsc30247g00016 515 MobiDBLite consensus disorder prediction 33 47 - -
Stsc30247g00016 515 MobiDBLite consensus disorder prediction 1 128 - -
Stsc30247g00016 515 ProSiteProfiles Protein kinase domain profile. 205 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30247g00016 515 PANTHER OS08G0249100 PROTEIN 60 478 IPR046958 -
Stsc30247g00016 515 SMART serkin_6 205 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30247g00016 515 Pfam Protein kinase domain 206 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30247g00016 515 MobiDBLite consensus disorder prediction 50 64 - -
Stsc30247g00016 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
Stsc30247g00016 515 ProSitePatterns Protein kinases ATP-binding region signature. 211 233 IPR017441 GO:0005524
Stsc30247g00016 515 Gene3D Phosphorylase Kinase; domain 1 172 279 - -
Stsc30247g00016 515 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 176 279 - -
Stsc30247g00016 515 SUPERFAMILY Protein kinase-like (PK-like) 185 468 IPR011009 -
Stsc30247g00016 515 Gene3D Transferase(Phosphotransferase) domain 1 282 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30247g00016 Stsc-Chr30247 82694 85055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30247g00016 188 469 Trihelix Transcription Factor Family AT1G68690 43.581 6.75e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc30247g00016 Pkinase 5.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30247g00016 - - lja:Lj6g3v1915960.1 536.184