Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30247g00010 ATGGCTAGGTACCGAAGCCGCAGCAGAAGCTACAGCCCTCGCCGCCGTAGCCGAACACCGCCCCGCGAACGCAAGCGCTACGACGACGATCGCTATGGCGACTCCAGATCCCACAGGGACCGCCGCTCCCCACTCCCTTCTGGCCTTCTTGTTCGTAATCTCCCCCTTGATGCTAGGCCTGAAGATCTTAGGGTTCCATTCGAGCGCTTTGGACCTGTGAAGGATGTTTATCTTCCTAAGAATTATTATACTGGTGAACCTCGAGGGTTTGGGTTTGTGAAGTATCGATACGGTGAAGATGCAGCTGAGGCAAAGCAACAACTAAATCATACCACCATTGGAGGGCGTGAAATAAGAATTGTGTTTGCCGAGGAAAACAGGAAAACCCCTCAGGAGATGCGGGTCATTTCTCGGGGAAGTAGCCGTCATGGAGGTAGCAGGAGGAGGAATCGGTCAAGGTCCCCAAGACGCCGATATAGATCTTATTCTCGGTCTCCAACACCTGCCCGGGATGATTCAAGGAGTGGCAGGGGCAAGGGAAGGGATAAGGAAGATTACTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCACGCTCTCCTAGTGATGGGAAGGACTACAGGAGATCTCCACATACCAGGTCTCGCTCTCCTAGTGATGTAAAGGACTATAGGAGGTCTCGCTCTCCTACTGATGGGAAGGGCTACAGGAGGTCCCCACAGCCAAGGTCTCGCTCTCCTAGAGCTGAGAAGGATCACAGGAGGTCTCCAAATCCCAGGGAGAATGGTGGTAGTCCTAATGAGAAGAGGGGTCGTACACCTAGCAGATCAAAGAGTCCTAGGTGTAATGGCCGCAGTCCTTCTAGATCTCGTTCGTGA 879 0.5267 MARYRSRSRSYSPRRRSRTPPRERKRYDDDRYGDSRSHRDRRSPLPSGLLVRNLPLDARPEDLRVPFERFGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQQLNHTTIGGREIRIVFAEENRKTPQEMRVISRGSSRHGGSRRRNRSRSPRRRYRSYSRSPTPARDDSRSGRGKGRDKEDYYSPERSRSYSRSRSPSDGKDYRRSPHTRSRSPSDVKDYRRSRSPTDGKGYRRSPQPRSRSPRAEKDHRRSPNPRENGGSPNEKRGRTPSRSKSPRCNGRSPSRSRS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30247g00010 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Stsc30247g00010 292 MobiDBLite consensus disorder prediction 1 47 - -
Stsc30247g00010 292 Gene3D - 2 136 IPR012677 -
Stsc30247g00010 292 MobiDBLite consensus disorder prediction 164 233 - -
Stsc30247g00010 292 SMART rrm2_1 48 121 IPR003954 GO:0003676
Stsc30247g00010 292 MobiDBLite consensus disorder prediction 141 160 - -
Stsc30247g00010 292 MobiDBLite consensus disorder prediction 243 275 - -
Stsc30247g00010 292 SUPERFAMILY RNA-binding domain, RBD 49 154 IPR035979 GO:0003676
Stsc30247g00010 292 SMART rrm1_1 48 121 IPR000504 GO:0003723
Stsc30247g00010 292 MobiDBLite consensus disorder prediction 124 292 - -
Stsc30247g00010 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Stsc30247g00010 292 MobiDBLite consensus disorder prediction 22 45 - -
Stsc30247g00010 292 MobiDBLite consensus disorder prediction 1 21 - -
Stsc30247g00010 292 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 48 226 - -
Stsc30247g00010 292 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Stsc30247g00010 292 MobiDBLite consensus disorder prediction 277 292 - -
Stsc30247g00010 292 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30247g00010 Stsc-Chr30247 59613 63493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30247g00010 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 5.28e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30247g00010 K12900 - gmx:100788749 280.026