Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30247g00010 | ATGGCTAGGTACCGAAGCCGCAGCAGAAGCTACAGCCCTCGCCGCCGTAGCCGAACACCGCCCCGCGAACGCAAGCGCTACGACGACGATCGCTATGGCGACTCCAGATCCCACAGGGACCGCCGCTCCCCACTCCCTTCTGGCCTTCTTGTTCGTAATCTCCCCCTTGATGCTAGGCCTGAAGATCTTAGGGTTCCATTCGAGCGCTTTGGACCTGTGAAGGATGTTTATCTTCCTAAGAATTATTATACTGGTGAACCTCGAGGGTTTGGGTTTGTGAAGTATCGATACGGTGAAGATGCAGCTGAGGCAAAGCAACAACTAAATCATACCACCATTGGAGGGCGTGAAATAAGAATTGTGTTTGCCGAGGAAAACAGGAAAACCCCTCAGGAGATGCGGGTCATTTCTCGGGGAAGTAGCCGTCATGGAGGTAGCAGGAGGAGGAATCGGTCAAGGTCCCCAAGACGCCGATATAGATCTTATTCTCGGTCTCCAACACCTGCCCGGGATGATTCAAGGAGTGGCAGGGGCAAGGGAAGGGATAAGGAAGATTACTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCACGCTCTCCTAGTGATGGGAAGGACTACAGGAGATCTCCACATACCAGGTCTCGCTCTCCTAGTGATGTAAAGGACTATAGGAGGTCTCGCTCTCCTACTGATGGGAAGGGCTACAGGAGGTCCCCACAGCCAAGGTCTCGCTCTCCTAGAGCTGAGAAGGATCACAGGAGGTCTCCAAATCCCAGGGAGAATGGTGGTAGTCCTAATGAGAAGAGGGGTCGTACACCTAGCAGATCAAAGAGTCCTAGGTGTAATGGCCGCAGTCCTTCTAGATCTCGTTCGTGA | 879 | 0.5267 | MARYRSRSRSYSPRRRSRTPPRERKRYDDDRYGDSRSHRDRRSPLPSGLLVRNLPLDARPEDLRVPFERFGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQQLNHTTIGGREIRIVFAEENRKTPQEMRVISRGSSRHGGSRRRNRSRSPRRRYRSYSRSPTPARDDSRSGRGKGRDKEDYYSPERSRSYSRSRSPSDGKDYRRSPHTRSRSPSDVKDYRRSRSPTDGKGYRRSPQPRSRSPRAEKDHRRSPNPRENGGSPNEKRGRTPSRSKSPRCNGRSPSRSRS | 292 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30247g00010 | 292 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 49 | 119 | IPR000504 | GO:0003723 | |
Stsc30247g00010 | 292 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Stsc30247g00010 | 292 | Gene3D | - | 2 | 136 | IPR012677 | - | |
Stsc30247g00010 | 292 | MobiDBLite | consensus disorder prediction | 164 | 233 | - | - | |
Stsc30247g00010 | 292 | SMART | rrm2_1 | 48 | 121 | IPR003954 | GO:0003676 | |
Stsc30247g00010 | 292 | MobiDBLite | consensus disorder prediction | 141 | 160 | - | - | |
Stsc30247g00010 | 292 | MobiDBLite | consensus disorder prediction | 243 | 275 | - | - | |
Stsc30247g00010 | 292 | SUPERFAMILY | RNA-binding domain, RBD | 49 | 154 | IPR035979 | GO:0003676 | |
Stsc30247g00010 | 292 | SMART | rrm1_1 | 48 | 121 | IPR000504 | GO:0003723 | |
Stsc30247g00010 | 292 | MobiDBLite | consensus disorder prediction | 124 | 292 | - | - | |
Stsc30247g00010 | 292 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 47 | 125 | IPR000504 | GO:0003723 | |
Stsc30247g00010 | 292 | MobiDBLite | consensus disorder prediction | 22 | 45 | - | - | |
Stsc30247g00010 | 292 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Stsc30247g00010 | 292 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 48 | 226 | - | - | |
Stsc30247g00010 | 292 | ProSitePatterns | Protamine P1 signature. | 2 | 12 | IPR000221 | GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092 | |
Stsc30247g00010 | 292 | MobiDBLite | consensus disorder prediction | 277 | 292 | - | - | |
Stsc30247g00010 | 292 | FunFam | Serine/arginine-rich SC35-like splicing factor SCL28 | 2 | 139 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30247g00010 | Stsc-Chr30247 | 59613 | 63493 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30247g00010 | 51 | 109 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 45.763 | 5.28e-07 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30247g00010 | K12900 | - | gmx:100788749 | 280.026 |