Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30247g00005 ATGACGTACGAGAAAGTAGTAGCGAGTGTGATAAGCTCTGATCACGCATCAGTGGTGTCCATGAACATGTTCGTAGCACTTCTATGCGCTTGTATCATAATAGGTCACTTGCTTGAGGAGAATCGATGGCTCAATGAATCCATCACCGCCCTTCTTATTGGTCTCTGTACAGGAGTCTTCATACTGCTGAACACTGGAGGAAGAAGCTCTCACATATTCGTTTTTAGTGAAGATCTTTTCTTTATTTACCTTCTCCCACCTATTATTTTCAATGCCGGGTTTCAAGTGAAGAAGAAACAGTTCTTCCGCAATTTCATGACTATAATTCTCTTTGGTGCCGTTGGTACTTTGATATCATTCGCTGTCATATCACTCGGTGCTATGCACTTATTCCAGAAATTGGATCTTGGTTCACTCAAGATTGGAGATTATCTAGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACTTTGCAGGTGCTTAATCAGGATGAGACACCATTACTGTACAGCCTAGTGTTTGGGGAAGGAGTAGTGAACGATGCTACTTCTGTGGTGCTCCTCAAAGCAATTCAGAATTTTGACCTTTCCCACATTGACTTTGCCACTGCTTCAGAATTATTAGCCAATTTTTTATACTTATTCATTGCAAGCACTGTGCTGGGAATTTTAGTTGGATTGCTTAGTGCATACATTATCAAAAATCTCTATTTTGGCAAGTTGATCAGACATTGTACTGATCGTGAGGTTGCTCTTATGATACTAATGGCTTACCTTTCATACATGCTTGCTGAGCTATTTGCTTTGAGTGCCATTCTCACCATGTTCTTCTGCGGCATAGTTATGTCTCACTACACATGGCACAATGTTACAGAAAGTTCAAGAGTCACAACCAAGCATGCTTTTGCAACGTTGTCATTCATTGCTGAGATATTTATATTCCTTTATGTTGGGATGGATGCACTGGACATGGAGAAGTGGCGATTGATAAGCCAAAGTCCTGGAAAATCAGTTGGGATCAGTTCATTGCTTCTAGGACTTATCCTAGTTGGAAGAGCAGCCTTTGTTTTCCCTCTCTCATTCTTATCCAATATGTTCAAGAAATCCTCATATGAGAAAATTGACATGAAGCAACAAATTACGATTTGGTGGTCTGGTCTCATGCGCGGTGCTGTTTCTATAGCCCTTGCTTACAACCAGTTTACAAGGCTAGGCCACACTAAGTTGCGCGAGAATGCCATCATGATCACTAGTACCATCTCTGTTGTTCTCTTCAGCACAGTGGTGTTTGGGATGATGACAAAGCCACTTGTGAGGTTACTGCTTCCTTCTTCCAAACATATGATCAACATACCGTCCCCACCATCGACGCCAAAGACGCTCACAGAGCCACTATTGGGCAATGGACATCACGACTCAGGGACCAACAATGGTGACAATCTAAATGGGCCTAGCCCAAACCCACTGCGTATGCTTCTGAACTTGTGTAATCGTGGAGTACACCATTATTGGCGCAAGTTTGATGACTCTGTTATGCGTCCTGTATTTGGTGGGAGGGGTTTTGTACCTTACGTTCCAGGTTCACCCCTTGAGCCGGGTCTTCCCCGGTGGCATTGA 1623 0.4288 MTYEKVVASVISSDHASVVSMNMFVALLCACIIIGHLLEENRWLNESITALLIGLCTGVFILLNTGGRSSHIFVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIILFGAVGTLISFAVISLGAMHLFQKLDLGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLLKAIQNFDLSHIDFATASELLANFLYLFIASTVLGILVGLLSAYIIKNLYFGKLIRHCTDREVALMILMAYLSYMLAELFALSAILTMFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFIAEIFIFLYVGMDALDMEKWRLISQSPGKSVGISSLLLGLILVGRAAFVFPLSFLSNMFKKSSYEKIDMKQQITIWWSGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTISVVLFSTVVFGMMTKPLVRLLLPSSKHMINIPSPPSTPKTLTEPLLGNGHHDSGTNNGDNLNGPSPNPLRMLLNLCNRGVHHYWRKFDDSVMRPVFGGRGFVPYVPGSPLEPGLPRWH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30247g00005 540 Gene3D - 140 191 - -
Stsc30247g00005 540 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Stsc30247g00005 540 PANTHER SODIUM/HYDROGEN EXCHANGER 13 518 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Stsc30247g00005 540 MobiDBLite consensus disorder prediction 454 486 - -
Stsc30247g00005 540 PRINTS Na+/H+ exchanger signature 148 158 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc30247g00005 540 PRINTS Na+/H+ exchanger signature 108 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc30247g00005 540 PRINTS Na+/H+ exchanger signature 79 90 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc30247g00005 540 PRINTS Na+/H+ exchanger signature 93 107 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc30247g00005 540 Pfam Sodium/hydrogen exchanger family 25 441 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30247g00005 Stsc-Chr30247 17404 20765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30247g00005 9 533 Antiporters AT3G05030 71.970 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30247g00005 - - ccaj:109808409 887.871