Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30246g00006 ATGGAATTGACAAGACCTGGCTATGCCGTGATTTATGTCATTCTACTTTGCGCATTGGCACAAGGGGGCTCAGAAGGGAAGAGGGGCGAGGACGATGATTTTTCTTCATCATACTTACTTGTACACACAACCACAAAACAGGCAGAGATAGTGCCAAAACATAGAAAAGAATTGACAAAGAACATTGAAAGCAAAGATTTGGACTTAAAAGCACAACAAAAGAACAATGACATTAGTCCCATACTTTTCACTGAAAACAACACAAAGCAAGCAAACGAATCAGACCAAGCTATTGATCCACCACAGCCACAGCCATTGCATCATATGCTTGCTGGTTCTAAATCTCTATCAGAAAATGATACTGTAACTTCTTCACCACCTACCAAAAATGAAGATGACAAACAACCAAAAACAACGGTTCGTGGCGCCGCTGCTGTATCAGGAATTCTAATGGCACTAGGGGTGTCCTTTTGCTATCGTCAGGTCAAAACCAACAAAGATGAAAAAGAAGATGTACTCGTATTAACCTCAAAGGATTATACTGGAGGGTCACCAAAGGTTGTTCGTTTGGGAGATAACAAGGATAAGGAAGAAGAATCTGGTACTGATAATAATGAAAATAAAACTTCTGATAATGATCCTGTAAGTGGCTCCATTGATAATAAGGATAAAGATAGCAACACTACCTCAGTGGTTGAGACAACAGCACCATTACAAGTTGTGGAACATGTAGTTGAACTTGCACCTGCCCCATCTCCACCACCTGCACCTCTATCAGCAACACAACCTCCGCCAGTCCCACGACCCCCTGCACCACTCCCCCCAACGGGTCACGGTCCGCCACCACCACCGCCTCCAAAGCTGGGTCAGGGCCCTCGGCCGCCACCACCGCCTCCTAGAGGAGGTCGAGGAGCAAATCAACCTCCACCTGTTCCTTCAAGACCATTGTCTAAAAGATTCAGAAATGTACCTAGACAAGATAGCTTTACTGAGGTCCCTGATCCTGCAAAGCCTAAACTAAAGCCATTTTTCTGGGATAAGGTTAATGCAAAATCTGATCAAACAATGGTGTGGCATAAAATCTGCGGAGGATCATTTGTATTCGATGAGGAACAGATGGAGTTTTTATTTGGTTGCACGAACCAGAACAAAAATGACCGCAAAAAGGAAGCACCACAAATTGATACAGCAGCACAGCTTGTTCAGATTATTGACAAGAAAAAGGCACAGAATTTGTCAATTCTTTTGAAAGCTTTGAATGTTACAACAGAGGAAGTTGTTGATGCCATTAAAGAAGGAAATGAGCTTCCAATTGAGCTGATGCAGACACTGGTGAAGATGGCACCGACAGCGGACGAGGAAACAAAGCTCAGGTTATATACAGGAAACCTTTCTGATCTTGGCCCTGCAGAGAGGTTTCTAAAAATTTTGGGTGATATTCCATTCGCTTTCAAACGCTTTGAATGTTTGATTTTCTTGTCTACCCTTCAAGAAGAGTCCTCAAATATGAGGGAGTATTTTACAACACTAGAGGTTGCTTGCAACAAACTGGTAAAAAGTAGGCTGTTCTTGAAACTGCTAGAGGCAGTTCTTAAAACCGGCAACCGAATGAACGACGGAACATACCGTGGCGGTGCACAAGCATTCAAGCTGGACACACTCTTGAAGCTATCAGATGTGAAAGGAACAGATGGGAAGACAACGCTGCTGCACTTCGTGGTTCAAGAGATTATACGATCTGAGGGAGTTAGAGCTCTAAGGACAGCTAAAGAAAAAGGAAGCATGTCAAACTCGGAAACAGGTAATTCTTCGGACGAAAACTATCGAAGCCTCGGCATTGAGGTAGTTTCAGGCCTAAGCACCGAGCTAATGGATGTTAGAAAGGCTGCCTTAATAGACGGCGATTTGATCAGTTCTACTGTGGCGAAACTCAACCACTCGCTTTCCAAGACTCAAGAGTTTCTTGAAACTGAGATGAAGCACGTTGAAGAAGACAGCGAGTTCCGAGCTTGCATGGAGGGGTTTATGGAGAAGGCTAAAGAGGAAGTGGCTTGGTTGGTTGCAGAGGAGAAGAGGATAATGGGTCTTGTTAAGGGAACTGCAGATTATTTCCATGGAAATTCAGGGAAAGAAGAAGGGCTGAGATTGTTCTTAGTTGTGCGTGATTTCTTGTTCATATTGGATAAGGTGTGCAAGGAGGTGAAGGAAACAACCGTTAAAGAGGCAAAGACTAATGCTGCTCAAAACAAGAATAATAATAAAACTAATACTAATAATAATAACAATAATGATGATAATAATACTAATAATAATGATATTGATAATGATAATGATAAAGATAAAGATAAAGAGTCTTCACAATCAGTGACGGCGGCGTCTTCCACCGGGGATGATCAGCAGCAAAATCCGGGGCCTTCTGAACTTCATAGGAAATTGTTTCCTGCTATTGTCCAAAGGAGAATTGATGATGATGATGACGATGACTTCAGCTCTGATGATGACAACGACAACGATAATGACAAAATTGCTCCATAG 2535 0.426 MELTRPGYAVIYVILLCALAQGGSEGKRGEDDDFSSSYLLVHTTTKQAEIVPKHRKELTKNIESKDLDLKAQQKNNDISPILFTENNTKQANESDQAIDPPQPQPLHHMLAGSKSLSENDTVTSSPPTKNEDDKQPKTTVRGAAAVSGILMALGVSFCYRQVKTNKDEKEDVLVLTSKDYTGGSPKVVRLGDNKDKEEESGTDNNENKTSDNDPVSGSIDNKDKDSNTTSVVETTAPLQVVEHVVELAPAPSPPPAPLSATQPPPVPRPPAPLPPTGHGPPPPPPPKLGQGPRPPPPPPRGGRGANQPPPVPSRPLSKRFRNVPRQDSFTEVPDPAKPKLKPFFWDKVNAKSDQTMVWHKICGGSFVFDEEQMEFLFGCTNQNKNDRKKEAPQIDTAAQLVQIIDKKKAQNLSILLKALNVTTEEVVDAIKEGNELPIELMQTLVKMAPTADEETKLRLYTGNLSDLGPAERFLKILGDIPFAFKRFECLIFLSTLQEESSNMREYFTTLEVACNKLVKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGVRALRTAKEKGSMSNSETGNSSDENYRSLGIEVVSGLSTELMDVRKAALIDGDLISSTVAKLNHSLSKTQEFLETEMKHVEEDSEFRACMEGFMEKAKEEVAWLVAEEKRIMGLVKGTADYFHGNSGKEEGLRLFLVVRDFLFILDKVCKEVKETTVKEAKTNAAQNKNNNKTNTNNNNNNDDNNTNNNDIDNDNDKDKDKESSQSVTAASSTGDDQQQNPGPSELHRKLFPAIVQRRIDDDDDDDFSSDDDNDNDNDKIAP 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 207 231 - -
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 248 315 - -
Stsc30246g00006 844 SMART it6_source 330 742 IPR015425 -
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 89 140 - -
Stsc30246g00006 844 PANTHER FORMIN-RELATED 65 784 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 179 231 - -
Stsc30246g00006 844 Pfam Formin Homology 2 Domain 333 725 IPR015425 -
Stsc30246g00006 844 Gene3D Formin, FH2 domain 336 767 IPR042201 -
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 742 770 - -
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 248 338 - -
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 189 206 - -
Stsc30246g00006 844 ProSiteProfiles Formin homology-2 (FH2) domain profile. 330 753 IPR015425 -
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 742 844 - -
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 114 129 - -
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 787 806 - -
Stsc30246g00006 844 Coils Coil 55 75 - -
Stsc30246g00006 844 SUPERFAMILY Formin homology 2 domain (FH2 domain) 281 743 - -
Stsc30246g00006 844 MobiDBLite consensus disorder prediction 772 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30246g00006 Stsc-Chr30246 58167 62939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30246g00006 334 822 FH2 protein (formin) Gene Family AT5G54650 53.908 4.90e-166 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30246g00006 - - ahf:112737572 785.408