Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30245g00017 ATGGCTTCTTCACCTTCATCCCCTGGTTTTGAACAAGTGAATGAAAAGAAGAACATGGATTCACACAGGAAAATGGTGATAGCTTTTGTTGTTGCCAGCACTTCACTTAGTGCACTCATTTTGTGCCTCTTATGCTTCTGGATTTATCACACAACCCATTCATCAAAATCCAAAAGAACAAGTCTTCAAACCTCAGGGAAAGATGTTGAGAAAGGGGGGTATCTGAGCAAATTCAGTTCTATAAAGATGGTGGGTAAGAAGGGTTGTGTTGCAATAATAGATTATAAGGAAATAGAAAAGGGAACAAGTAATTTCAAGGAGAGTAATATATTGGGCGAGGGTGGTTTTGGATGTGTTTATAAGGCTACTTTGGATGATAATTTGGATGTTGCTGTCAAGAAACTTCACTGTGAAAATCAATTTGCTGAGACTGAATTTGAGAATGAGGTGGAATTGTTAAGTAAAATTCAGCATCCCAACATAATTTCTTTATTGGGTTGTAGCCATGATGGCATTACAAAGTTTATTGTCTGTGAACTTATGCACAATGGATCATTGGAAACCCAGTTACATGGACCTTCTCATGGCTCAGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAAAATATCTGCATGAGCACTGTTACCCTGCAGTGATACATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCAAAGATTTGTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAATAAGAACAACATAAAGCTTTCAGGCACATTGGGGTATGTAGCTCCAGAATATCTTTTAGATGGTAAACTGACTGATAAAAGTGATGTGTATGCTTTTGGAGTTGTGCTTTTGGAACTTCTGTTAGGAAGAAAGCCTGTGGAGAAACTGGCACCAACCCAATGCCAATCTATTGTCACATGGGCCATGCCACATCTCACAGACAGATCCATGCTTCCCACCATAGTGGACCCTGTCATTAAGGATACAATGGATCTCAAGCACTTGTACCAGGTTGCTGCTGTGGCTGTGTTGTGTGTGCAACCGGAGCCAAGTTACCGGCCACTGATTGCGGATGTTCTGCACTCACTTATCCCTCTTGTACCTGTTGAGCTTGGTGGAACACTCAGAGTTGCACAAGTGACAAAACAAGTGTTACCAATTGATCATGTTGCTGATAATTCAAGTACCAATTGA 1230 0.4033 MASSPSSPGFEQVNEKKNMDSHRKMVIAFVVASTSLSALILCLLCFWIYHTTHSSKSKRTSLQTSGKDVEKGGYLSKFSSIKMVGKKGCVAIIDYKEIEKGTSNFKESNILGEGGFGCVYKATLDDNLDVAVKKLHCENQFAETEFENEVELLSKIQHPNIISLLGCSHDGITKFIVCELMHNGSLETQLHGPSHGSALTWHMRMKIALDTARGLKYLHEHCYPAVIHRDLKSSNILLDANFNAKICDFGLAITDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPTQCQSIVTWAMPHLTDRSMLPTIVDPVIKDTMDLKHLYQVAAVAVLCVQPEPSYRPLIADVLHSLIPLVPVELGGTLRVAQVTKQVLPIDHVADNSSTN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30245g00017 409 Gene3D Transferase(Phosphotransferase) domain 1 181 380 - -
Stsc30245g00017 409 Pfam Protein kinase domain 106 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30245g00017 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Stsc30245g00017 409 ProSiteProfiles Protein kinase domain profile. 105 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30245g00017 409 FunFam probable receptor-like protein kinase At1g80640 181 380 - -
Stsc30245g00017 409 CDD STKc_IRAK 111 378 - -
Stsc30245g00017 409 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Stsc30245g00017 409 Gene3D Phosphorylase Kinase; domain 1 67 180 - -
Stsc30245g00017 409 PANTHER OS01G0750732 PROTEIN 17 379 - -
Stsc30245g00017 409 FunFam Protein kinase superfamily protein 73 180 - -
Stsc30245g00017 409 SMART serkin_6 105 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30245g00017 409 SUPERFAMILY Protein kinase-like (PK-like) 87 375 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30245g00017 Stsc-Chr30245 178815 184813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30245g00017 12 379 Receptor kinase-like Gene Family AT3G58690 42.513 2.02e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Stsc30245g00017 Pkinase 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30245g00017 - - vra:106764755 641.728