Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30245g00011 ATGGCTTACCACAACCACAACCCACTCTCTGTCTCAGACTCTCACGACCTTCCTCTTCAACATTTCACCCACCAATCCAACTCCTTCCCTTCCTCTCCTCCCCACCCTAACTCCAAACCAAACTCCGACCCTCTCCAAACCACCGCACCAAGCTGGCTCAACAACGCACTCCTCCGAACCAACTTCACCGACACCACCAACACCACCGCCACCTCCAACGCCAATAACACCAACTCCAACTCCAATTTCCTCAACCTCCACACCGCCTCCGATTCCGCTTCCCAGCCTTCTCCATGGCTCGACTCCGTCGTCGCTACCGGCGTCAACTTCGAACCCGTGGACTTAAAGGCCGGAATTACCTCCGCCAAGGGGGAGGTCACGGCGCCTGTTGTCGGAGACGGTGGCGGAGGTGACGGCGGAGGAGGAGGGATGGTGAATTGGCAAGTAGGACGATGGAAGGCGGAGATACTGGCGCACCCGCTGTACGAGCAGCTTCTGTCGGCACACGTGGCGTGCCTGAGGATCGCGACGCCGGTGGACCAGCTCCCGAGGATCGACGCACAGCTGGCACAGTCACAGAATGTAGTCTCTAAGTACTCTGCCTTCGGCCATGCCCTTGGAGATGATAAAGAACTCGACCAGTTCATGTCGCACTACGTTTTGTTGCTTTGCTCCTTCAAAGAACAATTGCAGCAGCATGTCCGCGTCCACGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGAGAAGGTACGGGGGCAACAATGTCCGACGACGAAGATGATCAAGTTGATAGCGATGCCAATCTGTTTGACGCGAGTTTGGATGGAACAGATAGCATGGGGTTTGGCCCTCTTATTCCGACCGAGAACGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAATTAAAGCACGAATTGAAAAATGGTTATAAGGAGAAAATTGTCGACATAAGAGAAGAAATTTTGCGCAAGAGACGGGCAGGAAAACTTCCCGGCGACACGACCTCTGTCCTTAAAGCCTGGTGGCAATCACATTCCAAATGGCCTTACCCTACAGAGGAAGATAAGGCAAGGCTGGTGCAAGAAACTGGTCTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAGAGGAAGAGGAATTGGCACAGCAATCCTTCTTCTTCCACTGTCTTGAAGAGCAAGCGCAAAAGCAATGCAGGTGATAACAATGTTGATCGGTATATGTAA 1269 0.5201 MAYHNHNPLSVSDSHDLPLQHFTHQSNSFPSSPPHPNSKPNSDPLQTTAPSWLNNALLRTNFTDTTNTTATSNANNTNSNSNFLNLHTASDSASQPSPWLDSVVATGVNFEPVDLKAGITSAKGEVTAPVVGDGGGGDGGGGGMVNWQVGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVSKYSAFGHALGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDASLDGTDSMGFGPLIPTENERSLMERVRQELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKSNAGDNNVDRYM 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30245g00011 422 FunFam homeobox protein knotted-1-like 3 isoform X1 335 396 - -
Stsc30245g00011 422 ProSiteProfiles ELK domain profile. 314 334 IPR005539 GO:0003677
Stsc30245g00011 422 MobiDBLite consensus disorder prediction 7 32 - -
Stsc30245g00011 422 Pfam KNOX2 domain 206 256 IPR005541 GO:0003677|GO:0005634
Stsc30245g00011 422 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 400 - -
Stsc30245g00011 422 SMART KNOX2_2 202 257 IPR005541 GO:0003677|GO:0005634
Stsc30245g00011 422 MobiDBLite consensus disorder prediction 1 49 - -
Stsc30245g00011 422 Gene3D - 335 396 - -
Stsc30245g00011 422 MobiDBLite consensus disorder prediction 394 422 - -
Stsc30245g00011 422 SMART KNOX1_2 150 194 IPR005540 GO:0003677|GO:0005634
Stsc30245g00011 422 Pfam KNOX1 domain 153 193 IPR005540 GO:0003677|GO:0005634
Stsc30245g00011 422 MobiDBLite consensus disorder prediction 66 85 - -
Stsc30245g00011 422 Pfam ELK domain 314 335 IPR005539 GO:0003677
Stsc30245g00011 422 ProSiteProfiles 'Homeobox' domain profile. 334 397 IPR001356 GO:0003677
Stsc30245g00011 422 Pfam Homeobox KN domain 354 393 IPR008422 GO:0003677|GO:0006355
Stsc30245g00011 422 MobiDBLite consensus disorder prediction 394 411 - -
Stsc30245g00011 422 SMART HOX_1 336 401 IPR001356 GO:0003677
Stsc30245g00011 422 SMART ELK_2 314 335 IPR005539 GO:0003677
Stsc30245g00011 422 CDD homeodomain 337 398 IPR001356 GO:0003677
Stsc30245g00011 422 SUPERFAMILY Homeodomain-like 336 400 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30245g00011 Stsc-Chr30245 80031 83551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30245g00011 1 410 Homeobox Transcription Factor Family AT5G25220 65.837 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc30245g00011 KNOX2 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30245g00011 - - pcin:129303573 567