Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30245g00010 ATGGCTTACCACAACCACAACCCACTCTCTGTCTCAGACTCTCACGACCTTCCTCTTCAACATTTCACCCACCAATCCAACTCCTTCCCTTCCTCTCCTCCCCACCCTAACTCCAAACCAAACTCCGACCCTCTCCAAACCACCGCACCAAGCTGGCTCAACAACGCACTCCTCCGAACCAACTTCACCGACACCACCAACACCACCGCCACCTCCAACGCCAATAACACCAACTCCAACTCCAATTTCCTCAACCTCCACACCGCCTCCGATTCCGCTTCCCAGCCTTCTCCATGGCTCGACTCCGTCGTCGCTACCGGCGTCAACTTCGAACCCGTGGACTTAAAGGCCGGAATTACCTCCGCCAAGGGGGAGGTCACGGCGCCTGTTGTCGGAGACGGTGGCGGAGGTGACGGCGGAGGAGGAGGGATGGTGAATTGGCAAGTAGGACGATGGAAGGCGGAGATACTGGCGCACCCGCTGTACGAGCAGCTTCTGTCGGCACACGTGGCGTGCCTGAGGATCGCGACGCCGGTGGACCAGCTCCCGAGGATCGACGCACAGCTGGCACAGTCACAGAATGTAGTCTCTAAGTACTCTGCCTTCGGCCATGCCCTTGGAGATGATAAAGAACTCGACCAGTTCATGTCGCACTACGTTTTGTTGCTTTGCTCCTTCAAAGAACAATTGCAGCAGCATGTCCGCGTCCACGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGAGAAGGTACGGGGGCAACAATGTCCGACGACGAAGATGATCAAGTTGATAGCGATGCCAATCTGTTTGACGCGAGTTTGGATGGAACAGATAGCATGGGGTTTGGCCCTCTTATTCCGACCGAGAACGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAATTAAAGCACGAATTGAAAAATGGTTATAAGGAGAAAATTGTCGACATAAGAGAAGAAATTTTGCGCAAGAGACGGGCAGGAAAACTTCCCGGCGACACGACCTCTGTCCTTAAAGCCTGGTGGCAATCACATTCCAAATGGCCTTACCCTACAGAGGAAGATAAGGCAAGGCTGGTGCAAGAAACTGGTCTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAGAGGAAGAGGAATTGGCACAGCAATCCTTCTTCTTCCACTGTCTTGAAGAGCAAGCGCAAAAGGTGA 1236 0.5251 MAYHNHNPLSVSDSHDLPLQHFTHQSNSFPSSPPHPNSKPNSDPLQTTAPSWLNNALLRTNFTDTTNTTATSNANNTNSNSNFLNLHTASDSASQPSPWLDSVVATGVNFEPVDLKAGITSAKGEVTAPVVGDGGGGDGGGGGMVNWQVGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVSKYSAFGHALGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDASLDGTDSMGFGPLIPTENERSLMERVRQELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30245g00010 411 ProSiteProfiles ELK domain profile. 314 334 IPR005539 GO:0003677
Stsc30245g00010 411 MobiDBLite consensus disorder prediction 7 32 - -
Stsc30245g00010 411 SMART KNOX2_2 202 257 IPR005541 GO:0003677|GO:0005634
Stsc30245g00010 411 MobiDBLite consensus disorder prediction 1 49 - -
Stsc30245g00010 411 Pfam KNOX2 domain 206 256 IPR005541 GO:0003677|GO:0005634
Stsc30245g00010 411 SMART KNOX1_2 150 194 IPR005540 GO:0003677|GO:0005634
Stsc30245g00010 411 Pfam KNOX1 domain 153 193 IPR005540 GO:0003677|GO:0005634
Stsc30245g00010 411 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 397 - -
Stsc30245g00010 411 MobiDBLite consensus disorder prediction 66 85 - -
Stsc30245g00010 411 Pfam Homeobox KN domain 354 393 IPR008422 GO:0003677|GO:0006355
Stsc30245g00010 411 SUPERFAMILY Homeodomain-like 336 400 IPR009057 -
Stsc30245g00010 411 ProSiteProfiles 'Homeobox' domain profile. 334 397 IPR001356 GO:0003677
Stsc30245g00010 411 Gene3D - 333 405 - -
Stsc30245g00010 411 SMART HOX_1 336 401 IPR001356 GO:0003677
Stsc30245g00010 411 SMART ELK_2 314 335 IPR005539 GO:0003677
Stsc30245g00010 411 CDD homeodomain 337 398 IPR001356 GO:0003677
Stsc30245g00010 411 Pfam ELK domain 314 335 IPR005539 GO:0003677
Stsc30245g00010 411 FunFam homeobox protein knotted-1-like 3 isoform X1 335 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30245g00010 Stsc-Chr30245 80031 83551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30245g00010 1 411 Homeobox Transcription Factor Family AT5G25220 65.914 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc30245g00010 KNOX2 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30245g00010 - - gmx:100810257 563.148