Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30245g00002 ATGCAAGACTCTGTTTACCCCAGCTGTGGTTATTCAACTAACCATGGTGATTCTGGAAACTCATTTGTGTCTCTCCTTTATGGCCCACCATCCCTGTTGCAGTATGATTTCCAGGAATCGTCTGATAAAAAATTATGCACCCGGTCTGGTAATTGTACTGCTGCAAGTGGGAACTTTGTTGTTAATTGTAGTGATAGTGGATCCTTCCCAAATTCTAGTGGTGGAATCTTTGTTGAAAATTTAAATAGTAATAACATACAAAACAGGCAAGATACTGTTCTCGATAGTTCTTCCAGGGCAATTGTTGGTCTGAGTGGTTATTCTGTATTACATGATATTCGGAGTAATGATACTGCTGCACAGCCCGCAGTTCCTGTTGGCAAAAAGGAAAGGGAACTTTCTTTTCCTAGGAGCCAATGGTGTGGTACAAGCCCTGCATCTAGTCTAAATGTTTGTTCTACAGATAATCAAACTATTGCAAATATGGTTCCAGAACAATGCTCTTCCAAACCTAATTCCCTTTTTATGAGTGGATGCCCTCGTGTGTTCTGCATGGAAAAAAGTGGCTATCTTCTTCTCAGCAACACAGGGCTTCTTGGTATTATTTGCTCATGCCACCATTGCCACATGTCGGTTCTTAAGTTTTGTGAGCACGCAGGGTTATATGGCATCAATCCAGGGGATGCTGTTCATATGGAGAGTGGTGAAACAATTGCACAATGGCGAAATTTGTACCTATTAAAGTTTGGGATTAGGTCTCTGGGCAATGAAAGTGAATGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTCTGATGAGATCCAATTCATCTTCATCCAGTATGTCAAAGAATGATTTATCTCATATGTCGAGTTCATCTGCAATCAGATTAAGGTCTGCAAAGCCTTGTGATTATGTTACATTTCGAAAGGGCACCAGCACAGACCCTAATTTATTTAGTGGTGTATTTCCCGGAAAACAGCCTAATACAGTCCAGGAAAATGGGAAATTTCCTCTCAAAGGTTTTGTTGGTATGCGTACAACAACGAACATTGTTGGCACTCAAGGGGATGATGGTTGTCAACCTGTACCACCTTTCTTTGATTCCCTCAAACGGAATGAAAATTTGTCAGTTGCCTACTCTCCTTCACAAATTCCAACAAGCCTTCCAATAGACCATGAATGCATAAAAAACAATAATGCAAAAGATGTGCTTATAGGCAAAGATGCAGCATCCTCTAATATTGAGCTGAGGCTTGGACAACCACCTCAGAAAGGAAATCCAGTTCCATCATTTATTGGACATCCATTGTTTAATGCCCTTGTCAGCCCTCCAAAATTGCATCCTGCAAAGCCAATGATTAATATGCATTGCAGGGAGGGGAAATCACAGAACAATTTTTTCCATGGTTCCGGTTCCTTTAAAATGGTTGATCAACCTCAGCCTAAACTCAAAAACTATATGCCTGGTGTTAGCAATGCTTTAGGTGGTGCTAGAGCTAGGTCAAAACCTGAAAGTGCGGCCAACAGTTTATTGTTTTCACCACTTCCACAGTTAAATCCTCAGACAGAGGGAAAGACAAAAGCTAGTGAAATTTTGATGAATGATAGTGTGCCTATCTTGTCCAAGAAACATTTTGAATTAAGTGGCATGCAGTTTGCTCCTATTAATGTTCCCTGGAATAGTAATGCTCACACTACTGGAAGGCAATTGGATTGTTCAGCAATGGGCTCCATCAAAGGTTCGGACAACAATAAAGTTGTTAACTTTGCTAAAGATCCTTATGCCAAGTTAAATTCTGGATTTGGAAATAGTAATCTCGTGAAATATCCAAGTTCCATCAGAGGAGCTGTTGGTGGCAATGGTAGTTGTATTTCATCTGTTAAAGGAAACATATTTGAGTCATATAATGAATCAAGGCCGCCGCCAAATATATCTGGTGGTGTAAATGTTCTATTTGATTCTAAAAATGTGTCTCCTGTTGGAAAAAATAATCATTTTACCACAGCAACGACAATTCCATTAGAAGGAATTGTGAAGGGCTTTCCCTTTCTTCTACCAAATTCTACATCAAATCAGACTACTACTTCACCACAGCAACAGGGCATTAATTTTGATAGTCCTTTGCTTGATGGAAATATGAAGTTGCTTGCACTGGCACAGATATTGGAGTTATCTAAGCAACAACAGGCATTTCATTTTAATGAAATGAATCAAAAGCACAGGATATCCAGCAACACTTCAGAAGTTCAGCCTGATATATATGAGGCTTCGATGTGTGAACAGTTCTCTTTTGGTGCTACATTAAAATTGCCACAAAAAAGAGGGCCTTGCAGGAGTCCTGATAATATTGATGGTTTAGAGAAGCTGACTTCCCTCACAGGTTTGAACAGATACTGTTTCTCTGGCTTGACACCAGTACCTTTACACTCTAAAGAAAAGAAACCACAATGTAAACAGGCCTACAATCTTCAAAATGATGGGCAATCATTGAGCCTTGGAGTAAACAAAGACAATACGCTTTTTCAGAGATCAAGTGCATCCGACAATTGCACTGAGAAACCATTGGATATGAATCTGGGAAAATACAATTCTGCTGCAGGCGAAAACTGTTCTGGTACCAATTTTTTCTTGGGAAATGGACCAACTTATAATTTTAAAGAATTTACAAAATCTAGTGATGAAACTTCTTTGAAGATAATTTCAAAGGATACTCATCAATGGAGAGAGGTACCATGTAAGCTGCGGAAAGCAGATTGTGATGCAAAATCTTTAGATCCGATAGTAACAATTATGGATTGGGAAGGACAGGATGATGTTCAAAATGAAAGTACTTCTGCTAAACGCTTCAAAAGGAATTTTAATATGGAAGACCTATTGAAAGCACAAGAAAAGTCTAACTTCTCCTCTGGGTCTTGTGCACCTGTGGTCACTCAGGCTTCTGTGGAGTTCAATAAGGTTGATTCTTGTACTATTGATGGTGGAGACACTGCTGATTTCGACAACCTTGTACTTGATGAGGGCTCAGTAATCAATAAAGGTTGGTCACCTGATGCAGTTGAAAGTGAAAGAAGTTCTGAGTTTCTAGGATCCACATGTGAGAGTTACTTGAATAAAGGTCCTCTGAGAGTCATAAATGATAAACCGTGTTGTAGTCTCCTTGATGAGCTTAAACTGTTAGATTCTTTGACCAGGAAAAAAGTACGGGACCGAAGTCATATACTTTCTGGTAATTTTAAAGCCAATCAATCACAAAATGTCAAGGATTTAAAAGGAAAAAAGAAAAGTAGTAGGCTGAGGAATCTAGATGCCTCATTGTCTTCCAGAGCATCTTCCTTATTGCATAACAAGAATGGTGAAATGCAAATGTACTTTCCATCTAGCCAGCAAAAATCATCTACTAAGGCTGTGTTTCTCCAGTCTAATGCCAAGTGTAAACACACAATTTCAGGTAACCATTATTTGAGTGCACGCCAGGGTGAAAAGGATTATAGTTCTGTGTCAGAATCGAGTTTAAATGACGAGTTCCGTAGCTTGTGCGAATTTGCTGGAAGAAAGAAACCAAGAGCAGATTACCCTTCTGATTGTGTTGGACATTTTCAAATGCAAGATCCAAATTTGGAGAAAACTGAAACTGCCAAGGTGGAGTCGTCGTTTAGCAGGGGGACACATGGCAGTAGAATCACAAGGCCAATAGTATGTGGGGAATATGGTGAAATATGTAGTGAAGAATTGGGTGGAAAATTGCCAAAAATTGTTTCTCTTAGTAAGGTTCTTAAAAGTTCAAAAAGATGTAAGGTGCCTAAATTAACCTCGAAAAAGAAATTAAAGAGATTGAGCTTTGGAAGTAATGAACACTGCTGTGATAAACCCGGTTTGGAGAGGGGCAACACACCACATGTTATTTTAAAAGGAAAGAGAGACTCCAAAGCTATACAGGGTAATGGTATTGTAAATATAGCTGCATTAAAGCTGAAGAGCAAGGAAATTCGGAAAGTACGCAGTATTAATGAACTGACTGCTAAAGAAACCAAAGTGAAGGATACTGTGGAGTATGGTGAAGATATGGAGCATGGTTGCTGTAACACCAAAAGCAGAAACTCTGTTCAAGAATGCTTGGGCATCTCCATTCAAAATTTAGACGCATTCTGCTCTGTGTGCCAAAACTCAAGCAATGATGACAATAACTGTTTGTTGGAGTGTAGTCGGTGTCTAATTAGAGTTCATCAGGCTTGCTATGGAATCCCCACATTACCTAAAAAAGGCCGTTGGTGTTGTAGACCATGCCGAACAAACTCAAAAGATATTGCTTGTGTTCTATGTGGTTATGGAGGGGGAGCCATGACTCGAGCAATGCAGAATCGCACAGTGGTGAAAAGCCTCCTAAAAGCGTGGAGTATTGAAAAGGGGGGCATGTCTAAGCATACTACTACACCTGAAATTTTTGAGAAGGAAAGAGATGTATTTGATTCCACAAAATCTGACCCAAAATTTGACCAAACTTGCGGTTTGAAGTCTGGGAATGTTGAGAACTCAAGATCAGACCAGTTGAAAGTTGAGATGTCAACAAATCAAATGCAAAATGTCTCATACAATATTTTTAAGGTTCATAACAGCATTACAGCAGGAGTTCATGATACATCTGTGAAGCAGTGGATTCATATGGTTTGTGGGCTTTGGACTCCTGGAACAAGATGCCCTAATGTTAATACAATGAGTGCTTTTGATGTATCTGGTGTTACACGTCCCAGAGAAGATGTGGTTTGTTCCATCTGCAACCGCTGGGGTGGCTCTTGTATAGAGTGCAGGATTGTTAATTGTTCGGTCAAGTTTCATCCTTGGTGTGCTCATCAGAAGAACCTGTTGCAATGTGAGACTGAAGGTGATGATGATGAGAAGGTTGGATTTTATGGAAGATGTATGCTTCATGCTGTTGGCCCTAGATGTCAGCCCAATTATGATCCTGTTGATGAGATAGATAGCTTAGAAGAAAGGGAATTTACCTGTGCCAGGACAGAGGGTTACAAGGGCCGTAAAAGGGATGGTTATCATAGACATTGTTACAATGGCTTAAAGGGAAAGGGTGCAAGTGGGTGCCTTGTTCCTGAAGAACAGTTAAATGCTTGGATTTACATTACCGGGCAGAAATTGTGTCCACAAAGACTCCCTAACCCTAAACCCGCATCAGATATTGAGCATGATTGTCGGAAGGAATATGCTCGGTACAAGCTAGCAAAGGGTTGGAAACACCTTGTTGTTTACAAATCTGGAATTCATGCCCTTGGTCTTTACACTTCTCGATTCATTTCCCGTGGTGAAATGGTTGTAGAGTATGTTGGCGAAATTGTGGGGTCACGGGTAGTTGATAAAAGAGAAATTGAATATCAATCTGAAAGAAAGCTTCAGTACAAGGGTGCTTGCTACTTCTTCAGGATAGACAAAGAACATATTATTGATGCCACAAGGAAAGGGGGCATAGCCCGTTTTGTTAACCACTCATGCTTGCCAAATTGCGTTGCGAAAGTGGTTACTATAAGGCATCAGAAGAAGGTTGTCTTTTTCGCAGAGAGGGACATATATCCTGGTGAAGAGATAACATACGATTACCACTTTAACAACGAAGATGAAGGAAAGAAGATTCCATGTTATTGCAATTCCAAAAATTGCAGGCGCTATCTGAACTGA 5688 0.4005 MQDSVYPSCGYSTNHGDSGNSFVSLLYGPPSLLQYDFQESSDKKLCTRSGNCTAASGNFVVNCSDSGSFPNSSGGIFVENLNSNNIQNRQDTVLDSSSRAIVGLSGYSVLHDIRSNDTAAQPAVPVGKKERELSFPRSQWCGTSPASSLNVCSTDNQTIANMVPEQCSSKPNSLFMSGCPRVFCMEKSGYLLLSNTGLLGIICSCHHCHMSVLKFCEHAGLYGINPGDAVHMESGETIAQWRNLYLLKFGIRSLGNESEWDWPEVLSTTGSLMRSNSSSSSMSKNDLSHMSSSSAIRLRSAKPCDYVTFRKGTSTDPNLFSGVFPGKQPNTVQENGKFPLKGFVGMRTTTNIVGTQGDDGCQPVPPFFDSLKRNENLSVAYSPSQIPTSLPIDHECIKNNNAKDVLIGKDAASSNIELRLGQPPQKGNPVPSFIGHPLFNALVSPPKLHPAKPMINMHCREGKSQNNFFHGSGSFKMVDQPQPKLKNYMPGVSNALGGARARSKPESAANSLLFSPLPQLNPQTEGKTKASEILMNDSVPILSKKHFELSGMQFAPINVPWNSNAHTTGRQLDCSAMGSIKGSDNNKVVNFAKDPYAKLNSGFGNSNLVKYPSSIRGAVGGNGSCISSVKGNIFESYNESRPPPNISGGVNVLFDSKNVSPVGKNNHFTTATTIPLEGIVKGFPFLLPNSTSNQTTTSPQQQGINFDSPLLDGNMKLLALAQILELSKQQQAFHFNEMNQKHRISSNTSEVQPDIYEASMCEQFSFGATLKLPQKRGPCRSPDNIDGLEKLTSLTGLNRYCFSGLTPVPLHSKEKKPQCKQAYNLQNDGQSLSLGVNKDNTLFQRSSASDNCTEKPLDMNLGKYNSAAGENCSGTNFFLGNGPTYNFKEFTKSSDETSLKIISKDTHQWREVPCKLRKADCDAKSLDPIVTIMDWEGQDDVQNESTSAKRFKRNFNMEDLLKAQEKSNFSSGSCAPVVTQASVEFNKVDSCTIDGGDTADFDNLVLDEGSVINKGWSPDAVESERSSEFLGSTCESYLNKGPLRVINDKPCCSLLDELKLLDSLTRKKVRDRSHILSGNFKANQSQNVKDLKGKKKSSRLRNLDASLSSRASSLLHNKNGEMQMYFPSSQQKSSTKAVFLQSNAKCKHTISGNHYLSARQGEKDYSSVSESSLNDEFRSLCEFAGRKKPRADYPSDCVGHFQMQDPNLEKTETAKVESSFSRGTHGSRITRPIVCGEYGEICSEELGGKLPKIVSLSKVLKSSKRCKVPKLTSKKKLKRLSFGSNEHCCDKPGLERGNTPHVILKGKRDSKAIQGNGIVNIAALKLKSKEIRKVRSINELTAKETKVKDTVEYGEDMEHGCCNTKSRNSVQECLGISIQNLDAFCSVCQNSSNDDNNCLLECSRCLIRVHQACYGIPTLPKKGRWCCRPCRTNSKDIACVLCGYGGGAMTRAMQNRTVVKSLLKAWSIEKGGMSKHTTTPEIFEKERDVFDSTKSDPKFDQTCGLKSGNVENSRSDQLKVEMSTNQMQNVSYNIFKVHNSITAGVHDTSVKQWIHMVCGLWTPGTRCPNVNTMSAFDVSGVTRPREDVVCSICNRWGGSCIECRIVNCSVKFHPWCAHQKNLLQCETEGDDDEKVGFYGRCMLHAVGPRCQPNYDPVDEIDSLEEREFTCARTEGYKGRKRDGYHRHCYNGLKGKGASGCLVPEEQLNAWIYITGQKLCPQRLPNPKPASDIEHDCRKEYARYKLAKGWKHLVVYKSGIHALGLYTSRFISRGEMVVEYVGEIVGSRVVDKREIEYQSERKLQYKGACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVVTIRHQKKVVFFAERDIYPGEEITYDYHFNNEDEGKKIPCYCNSKNCRRYLN 1895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30245g00002 1895 Pfam SET domain 1763 1870 IPR001214 GO:0005515
Stsc30245g00002 1895 CDD SET_SETD1-like 1752 1891 - -
Stsc30245g00002 1895 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1371 1444 IPR013083 -
Stsc30245g00002 1895 SMART PHD_3 1589 1645 IPR001965 -
Stsc30245g00002 1895 SMART PHD_3 1384 1431 IPR001965 -
Stsc30245g00002 1895 Pfam PHD-finger 1396 1431 - -
Stsc30245g00002 1895 Pfam Tify domain binding domain 198 243 IPR032308 -
Stsc30245g00002 1895 ProSiteProfiles Zinc finger PHD-type profile. 1382 1433 IPR019787 -
Stsc30245g00002 1895 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 688 1895 - -
Stsc30245g00002 1895 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1524 1645 IPR013083 -
Stsc30245g00002 1895 SUPERFAMILY SET domain 1749 1895 IPR046341 -
Stsc30245g00002 1895 ProSiteProfiles Extended PHD (ePHD) domain profile. 1531 1645 IPR034732 -
Stsc30245g00002 1895 CDD ePHD 1547 1635 - -
Stsc30245g00002 1895 ProSiteProfiles SET domain profile. 1750 1871 IPR001214 GO:0005515
Stsc30245g00002 1895 SUPERFAMILY FYVE/PHD zinc finger 1381 1435 IPR011011 -
Stsc30245g00002 1895 ProSiteProfiles Post-SET domain profile. 1879 1895 IPR003616 -
Stsc30245g00002 1895 SMART PostSET_3 1879 1895 IPR003616 -
Stsc30245g00002 1895 SMART set_7 1750 1877 IPR001214 GO:0005515
Stsc30245g00002 1895 Pfam PHD-zinc-finger like domain 1546 1629 - -
Stsc30245g00002 1895 Gene3D SET domain 1651 1895 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30245g00002 Stsc-Chr30245 19264 32460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30245g00002 1752 1895 C2H2 Transcription Factor Family AT2G23740 33.333 3.09e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc30245g00002 SET 1.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30245g00002 - - ahf:112697527 3115.48