Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30244g00005 ATGGCTTCTTCAAGCATGGAAGGTTCAATCCCCACCATGGACGAATTTGAGGCTCTCTTGTCAACCACCGACGTCGAGCTTCTCAAGAGAGCTTGGCGTAGCGAGAAGGCTGCTCCCGAGATTCTCCGCTACGATACCGATCTTGTTTCCCGTCTCACGGAACAGATTCAATTGATGGAAGAAACTGTGGAGGAGAAATCTACCAGTGGCGCTGACCCGCTTTCGTTGTCTTTATATCAGATGGACTTGGATAGGACTCTCTTTCTCTTGAGATCATATCTTCGGGTCCGCATACAAAAGATTGAAAAATACATGTTCCACATCCGAAAAACTGATGAGCTATGGAATAGGTGCATAGGTGACCTAAAACAACATCTTGAGGAGAGTGTTCTTTCGAAATTGCCTGAAAATTATCAATCTGTTGAGAAGCAATCTGTAATAAGTGAAGAGGATGACATGGGTAATTTACCATCCTAG 477 0.4444 MASSSMEGSIPTMDEFEALLSTTDVELLKRAWRSEKAAPEILRYDTDLVSRLTEQIQLMEETVEEKSTSGADPLSLSLYQMDLDRTLFLLRSYLRVRIQKIEKYMFHIRKTDELWNRCIGDLKQHLEESVLSKLPENYQSVEKQSVISEEDDMGNLPS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30244g00005 158 PANTHER SLD5 PROTEIN 10 148 IPR008591 GO:0006261
Stsc30244g00005 158 Coils Coil 49 69 - -
Stsc30244g00005 158 Pfam GINS complex protein 53 112 IPR021151 -
Stsc30244g00005 158 SUPERFAMILY GINS helical bundle-like 21 145 IPR036224 -
Stsc30244g00005 158 Gene3D - 12 155 - -
Stsc30244g00005 158 PIRSF GINS_Sld5 2 156 IPR008591 GO:0006261
Stsc30244g00005 158 CDD GINS_A_Sld5 24 131 IPR038749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30244g00005 Stsc-Chr30244 57494 58975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30244g00005 1 154 Core DNA Replication Machinery Family AT5G49010 59.394 6.83e-61 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30244g00005 K10735 - qsa:O6P43_008399 224.557