Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30244g00004 ATGCATAAGGCGGAGAACATGTTAGGCAACAATCATGGGAGGGATCTTGGTTTCTCAAAGCAACACTTCCAGCCAGGATTTCCTGTTGTTTCTAATTCATGTCAGGATCTACGTAGTAATATTAATACTAGGGCAGGGGGAGAATTTCCTGTGCAGTTTGGTAATGATGGAGTTGCTTCTAGAAGAATTCCTCTTCCTCGTGAGACATCCCAAATGCGTGAAAATAGAGTAGCACAAAATAGGGAAAACAGCGATGTCAAGTATGAATGTCTTACTAATATCTTGGGGCTGAAGAGATTGGAGTCGCAGGGATCAGACATAAGTGACCTTCTATCTGTGAATGAACCAACTCATGAGATGGAGAATGGGGCTTCTGTGGCTGTTGGTGAATTAATTGATGAGCAGGGTGATCAAGGGCCACATATGTCATCTGTTGTGCAGAATGGATCTATGCATTTGAATGGTTTTGTTGGTTCAATTTTAGACGACTCTAGGAATGGGAGAATGAAGTGCCTTTGCAGCTTTGATGGAAAAATATTACCGAGGCCTAGTGATGGAAAACTCAGATATGTAGGGGGACAGACCCGCATGATATCCATTCAAAAGGATATTTCGTGGGAAGACCTTACGAAGAAGACCTTGGGTATTTGCAGCCACCCTCATACAATCAGATACCAACTTCCTGGGGAGGATCTCGATTCTCTAATATCTGTTTCCTCCGATGAAGATCTTCAACATATGGTCGAGGAATACCAGGGGCTCGAAAGAAATGAAGGTTCTCAAAGACTCAGAATATTTTTAATTCCTGTGGGTGAATCTGATGAGGCATGTTCACTTGTGGCAAGCACAATTCCACAGAGTGATGCTGATTACCAATATGTTGTTGCTGTGAATGGCATGCCAGGCCCTACTCTCAGAAAAAGTGCTGGGCAGTGTTTGCCGAATGAAGCAAGTCAATCCAATTCACCAGGTTTACAGAAAAATTCTCTCAATCCCTATTATCCTGTGGAAGCCAGCAGTGGTGCTCATGATTTTAATGCAGATGGAAGTTTAAATGATTCTCTGACTGTGCACAGATGCAACAATCAATCTCCACAAATTTCCTCTATGCTAATTAAGGGAGTAGGTTCAAGTATGGGTTATACGCAGTTGCTTGGCAATAATTCATGCCAAAGTAGTATAGAGAGCAATGCATCGTTTATTACTGCTCAGCTGCAACCTGAGAACTCCCCTATAAGCTTTGTTGATCGCAGATACCCCCAACAAGCAACTTTGAATCTCTTAAGTGACAATCTCCCACATCAACCTGATGATGTTTGTCCACCAAAGAAGCACATTGGAGGTCAATTTAGCAATTGCTGCCCTTACAAGGAATCTGTGACTCATTCATATCTGGAAGATTCAAACTTTCAACAGGCTGAATCTAATGGTACTAATAATCCCCCTTTTGGGATGCATCATTCATTTTCTGATTCACAGTTGAGGTCTTGTAACTGCTCACAAGAAGGATCCGACCTCTCTTTCTCCTTGAATCACGCAAAGGCTCAGCCATCTTCAATGTTACAGTCTAGTATCTCACAAGGAAATCTTATCGAGCTCCGGCATGATTCCAGTCTCCTTTATCCTCAATTACAAAGTAAGTTACCAAATAATATTGAGTCTTCTGAGTTGTATGGAAGGCAGGATTGTACATCATCTTCTCCATATTCAGAGTCACCAGGAATGGATGGAATTCATAAAGATAGCACTTTAATTGGAAAAAAGTACCCTGTGCCTCAAACTAATGTAAATGGATCTAGCTTTATGGTGAAGCATGCTGAGGACAATTCTTTAACTTCAGAAAAAAAGAATATAATTGAAGGAAAGAATCCTATTGGTGTAACAGATGGCAAGTTTTATGAAGGGAAATCACTTGCTGCTCATAAGGGGCAGGTGATTGAATTGAATGGCAAGATCAATATGCAAAAGGATTGGGAGCAAAGTTCTGAGGACATGAGGCAAACTACTATAAATAGTAAGAAATATGCTGTTGCTGAAGCTATGAATGGTGGGCAGGGATCTGATTTTGCATTGACAAGAAACATTAACTTAAATGGTTCTGTGCCAACCTGTAGAGAAACCTCTTGCCACAAAAATTCTCTTGGTGATCTTTTGTGTGAGCTGTCAACCCTACCTACATGTAAAGCTTTGCAAGTTCAACCTTCCATGAGTTGCACTGATCCCTGTTTTAATGAAGTTTCAACTTTAAGTTCTGCTTCTTTGTATCATGTGCAACATAATGATCCCCGTCCTTGCTCAAATTCAACTATGAATGATCAGCACAATCCAAACAACACTTCTTTCCATAAAGTTCCTTCTTTTATTGATGATGACTTGATAACCAGTACTGACCAGATGTTTCCAGTTATTAGTGGGCATTTTGCTGGAAATTCAAAAGCTGGAAATGTCATGCCGGGACAATCAAAAAATTTAGGAAACTTAAATGATGTAAATCAACCAAAACCATTTGGGCTTGTAGAAGATGTGACTGGTGTCGTTCCTCGAGCCATTCATTCTACATTTGCATGCATCCCACCTATTGTGGATGTAAATGGAAGTACACCTTTATCCTTGTCTTGTACAGAGGCAGATAGCATCATCGCAGACTCTGAACCTGAGGATTTTAAATATGAAGGATCTGACAAAAATGAGTCCCTTTCTGATGCAATGATAGCAGAAATGGAAGCGAGCGTCTATGGTTTGCAGATAATAAAGAATGCTGATCTTGAAGAACTTAAGGAGTTAGGATCCGGTACTTATGGAACTGTTTATCATGGAAAATGGCGGGGAAGTGATGTTGCTATAAAGAGGATTAAGAAGAGCTGTTTTGGAGGGAAACCTTCTGAACGAGAACGATTGACTAAAGATTTTTGGAGAGAGGCACAAATTCTTTCAAATCTTCATCATCCCAATGTCGTTGCATTTTATGGGATAGTACCAGATGCAGTTGGGGGAACATTGGCAACTGTAACCGAGTATATGGTTAATGGTTCCCTACGGCATGTCCTTCTCAAAAAAGATAGATTACTAGATAGCCGTAAAAGGCTAATAATTGCCATGGATGCGGCTTTTGGTATGGAATATTTGCACTCCAAAAACATTGTTGGAGATTTTGGATTATCAAGAATTAAGAGGAACACCCTGATATCTGGTGGTGTGCGAGGAACTCTTCCTTGGATGGCACCAGAGCTGTTGAATGGGAGCAGTAACAGGGTTTCTGAAAAGGTTGATGTTTTCTCATTTGGCATTTCAATGTGGGAGATCTTGACTGGTGACGAACCTTATGCAGATATGCATTATGGTGCCATTATTGGGGGGATTGTAAAGAACACTCTTAGACCACCCATTCCAAAACATTGTGATCCTGAATGGAGGAAGCTCATGGAAGATTGTTGGTCACCTGATCCTGAAAGCCGACCTTCCTTCACCGTGATAACTAACCGGTTACGATCTATGTATAAGGTGCTTCAAGAAAAGGGAGTTGTCAGGCACGACAGATAA 3540 0.4093 MHKAENMLGNNHGRDLGFSKQHFQPGFPVVSNSCQDLRSNINTRAGGEFPVQFGNDGVASRRIPLPRETSQMRENRVAQNRENSDVKYECLTNILGLKRLESQGSDISDLLSVNEPTHEMENGASVAVGELIDEQGDQGPHMSSVVQNGSMHLNGFVGSILDDSRNGRMKCLCSFDGKILPRPSDGKLRYVGGQTRMISIQKDISWEDLTKKTLGICSHPHTIRYQLPGEDLDSLISVSSDEDLQHMVEEYQGLERNEGSQRLRIFLIPVGESDEACSLVASTIPQSDADYQYVVAVNGMPGPTLRKSAGQCLPNEASQSNSPGLQKNSLNPYYPVEASSGAHDFNADGSLNDSLTVHRCNNQSPQISSMLIKGVGSSMGYTQLLGNNSCQSSIESNASFITAQLQPENSPISFVDRRYPQQATLNLLSDNLPHQPDDVCPPKKHIGGQFSNCCPYKESVTHSYLEDSNFQQAESNGTNNPPFGMHHSFSDSQLRSCNCSQEGSDLSFSLNHAKAQPSSMLQSSISQGNLIELRHDSSLLYPQLQSKLPNNIESSELYGRQDCTSSSPYSESPGMDGIHKDSTLIGKKYPVPQTNVNGSSFMVKHAEDNSLTSEKKNIIEGKNPIGVTDGKFYEGKSLAAHKGQVIELNGKINMQKDWEQSSEDMRQTTINSKKYAVAEAMNGGQGSDFALTRNINLNGSVPTCRETSCHKNSLGDLLCELSTLPTCKALQVQPSMSCTDPCFNEVSTLSSASLYHVQHNDPRPCSNSTMNDQHNPNNTSFHKVPSFIDDDLITSTDQMFPVISGHFAGNSKAGNVMPGQSKNLGNLNDVNQPKPFGLVEDVTGVVPRAIHSTFACIPPIVDVNGSTPLSLSCTEADSIIADSEPEDFKYEGSDKNESLSDAMIAEMEASVYGLQIIKNADLEELKELGSGTYGTVYHGKWRGSDVAIKRIKKSCFGGKPSERERLTKDFWREAQILSNLHHPNVVAFYGIVPDAVGGTLATVTEYMVNGSLRHVLLKKDRLLDSRKRLIIAMDAAFGMEYLHSKNIVGDFGLSRIKRNTLISGGVRGTLPWMAPELLNGSSNRVSEKVDVFSFGISMWEILTGDEPYADMHYGAIIGGIVKNTLRPPIPKHCDPEWRKLMEDCWSPDPESRPSFTVITNRLRSMYKVLQEKGVVRHDR 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30244g00004 1179 MobiDBLite consensus disorder prediction 557 581 - -
Stsc30244g00004 1179 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 188 270 - -
Stsc30244g00004 1179 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 915 1009 - -
Stsc30244g00004 1179 PANTHER SERINE-THREONINE PROTEIN KINASE 221 1163 - -
Stsc30244g00004 1179 Gene3D Transferase(Phosphotransferase) domain 1 1010 1175 - -
Stsc30244g00004 1179 MobiDBLite consensus disorder prediction 557 572 - -
Stsc30244g00004 1179 SUPERFAMILY CAD & PB1 domains 184 270 - -
Stsc30244g00004 1179 SUPERFAMILY Protein kinase-like (PK-like) 909 1160 IPR011009 -
Stsc30244g00004 1179 Pfam Protein tyrosine and serine/threonine kinase 1048 1162 IPR001245 GO:0004672|GO:0006468
Stsc30244g00004 1179 MobiDBLite consensus disorder prediction 313 333 - -
Stsc30244g00004 1179 SMART PB1_new 183 270 IPR000270 GO:0005515
Stsc30244g00004 1179 Gene3D - 187 269 - -
Stsc30244g00004 1179 Pfam PB1 domain 185 267 IPR000270 GO:0005515
Stsc30244g00004 1179 ProSitePatterns Protein kinases ATP-binding region signature. 928 953 IPR017441 GO:0005524
Stsc30244g00004 1179 CDD PB1_UP2 172 268 - -
Stsc30244g00004 1179 Gene3D Phosphorylase Kinase; domain 1 915 1009 - -
Stsc30244g00004 1179 ProSiteProfiles Protein kinase domain profile. 922 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30244g00004 1179 CDD STKc_MAP3K-like 928 1162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30244g00004 Stsc-Chr30244 49077 55702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30244g00004 167 300 MAP Kinase Kinase Kinase AT1G16270 56.716 2.71e-39 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Stsc30244g00004 PK_Tyr_Ser-Thr 7.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30244g00004 - - adu:107474844 2050.79