Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30242g00035 ATGGTGTCGAGGGGGCTGTTCGGGTGGTCCCCGCCGCACATACAGCCTCTCACGCCGGTGTCCGAGGTTTCGGAGCCGCCGGAGTCGCCGTCTCCGTATGTTGATCCCAGTGCCGAGACTTCCGCGTCGCAACAGGTTGAGTTGGAGGAGGAGATCGAGGAGCCGGAGGAGGTTGAGCCACCGCCAGCTGCCGTGCCTTTCTCCCGCCTCTTCGCCTGCGCCGACCGTTTTGACTGGTTCCTTATGATCCTCGGCTCCGTCGCCGCCGCAGCTCACGGCACTGCTCTCGTCGTTTACTTGCATTTCTTCGCCAAAATCATCCAGGTTCCTCAGCAAGATGACCAGTTTCACAGGTTCAAGGAGCTGGCTTTAACCATTGTTTATATTGCTGGGGGAGTTTTCGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACCGGAGAACGGCAGACAGCTGTTATCAGGTCAAAATATGTTCAAGTATTGCTTAATCAAGATATGAGCTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGCGATGTTTTGCTCATTCAGTCTGCACTTAGTGAAAAGGCAATTTCGTATATAAGGACCTTGTATGCATTTACAAATGAAACTCTGGCTAAATATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGCATATTAATCAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTCTTGGTTGTGCATGGAAAAGCTCATGGTGGTGAAATTATAACAGCTCTGTTTGCTGTGATTCTAAGTGGCTTGGGATTGAATCAAGCAGCAACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCTTATAGATTGTTTGAGATGATAAGCCGGTCATCCTCATCTTTTAATCATGATGGCAGTGCCCCTGCTTTAGTGCAAGGGAATATAGAGTTCCGGAATGTTTATTTCAGTTATCTTTCTCGTCCCGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTTCCTGCTAAGAAAGCTGTGGCACTTGTTGGCAGAAATGGCTCTGGCAAAAGTAGTATTATTCCACTCATGGAGCGATTCTATGATCCTACATTAGGAGAAGTTCTTTTAGACGGTGAAAACATCAAGAATTTGAAACTGGAATGGCTTAGAAGCCAAATTGGACTGGTCACCCAGGAACCTGCGTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGCAACCATGGATCAAATTGTAGAGGCTGCTAAAGTAGCTCATGCACATGCATTTATCAGCTCATTAGATAAAGGTTACGAAACTCAGGTTGGAAGGGCTGGTATAGCTTTGACAGAAGAGCAGAAAATAAAACTATCTATTGCAAGAGCTGTGCTTTTGAATCCATCGATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCCCTTGATCTACTTATGTTGGGGCGCTCGACAATAATAATTGCTCGAAGGCTTAGTCTCATACGTAATGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAGTTATTAAGCCGGGATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCCACAAAACTTCCCAAAAGGATGCCTATTCGGAACTACAAGGATGCTGCAGTTTTCCAAATTGAGAAAGATTCTTCAGAAAGTTTGAGAGAACCATCATCCCCCAAAATGAATAAATCACCCTCTCTTCAAAGAATTGCTGGCGTATTTCGGCCTTCGGATGGCTTCTTTAACTCACAAGATTCACCAAAAGCACGGAGCCCACCACCTGAGATGATGCTGGAAAACAGTTCCGCAGATAAGGAGCCGTCCATAAAAAGGCAGGACAGTTTCGAAATGAGACTACCAGAGTTGCCCAAGATTGATGTCCAGTCTGTGAATCGACAAGCATCAAATGGTTCTGATCCAGAATCTCCTATATCACCTCTGTTAACATCTGATCCTAAAAATGAACGCTCTCATTCCCAGACTTTTAGTAGGCCAGAGAGTCATTCTGATGATATTTCAGTGAAAATGGATCTAACAAAGGATGCACGGCATCGAGGGCAACCCTCACTTTGGAGGCTTGCTGAGCTCAGTTTGGCTGAGTGGCTTTATGCTGTGTTAGGAAGCACAGGTGCTGCTATCTTTGGTTCTTTCAACCCACTTCTTGCTTATGTTATTGGCATGGTGGTGACAGCGTACTATAGAATTGATGAAGCAAATCACTTGCATGGGGAGGTAAACAAGTGGTGCTTGGTCATTGCCTGCATGGGTTTTGTGACAGTTATTGCCAACTTTTTGCAGCATTTCTACTTTGGCATTATGGGGGAGAAAATGACAGAAAGAGTCAGGAGAATGATGTTTTCGGCTATGCTACGCAATGAAACTGGATGGTTTGATGAAGAGGAAAACAGTGCTGACAATTTATCCATGCGCTTGGCAAATGATGCTACATTTGTTCGTGCAGCTTTTAGTAATCGACTTTCAATATTTGTACAGGACAGTGCTGCAATTATTGTTGCTTTTCTCATTGGTGTTTTGCTGCAATGGCGATTAGCCCTTGTGGCTTTAGCAACACTTCCAGTTCTTTGTGTGTCTGCGATTGCACAGAAATTGTGGCTTGCTGGCTTTTCAAGAGGGATACAGGAAATGCACAGAAAGGCTTCTTTGGTTCTTGAAGACGCCGTTAGAAATATTTACACTGTTGTTGCATTTTGTGCTGGTAACAAGGTTATGGAGCTATACAGGCTGCAGTTAAATAAAATATTTATCAAGAGCTTTCTTCATGGAATGGCAATCGGTTTTGGATTTGGTTTTTCGCAGTTTCTACTCTTCTCTTGTAATGCCCTTCTACTTTGGTACACTGCAATATGCATAAAGAATGGATATGTGGATTCACCTACTGCAATGAAAGAGTACATGGTTTTCTCGTTTGCTACATTTGCACTTGTGGAGCCTTTTGGCTTGGCTCCTTACATACTTAAACGACGCAAATCTCTCGTTTCAGTGTTTGAGATTATAGACCGTGTACCTAAAATTGATCCTGATGATAGCTCTGCGGTGAAGCCACCCAATGTATATGGAAGCATTGAATTGAGAAATGTTGATTTCTGTTATCCTTCTCGGCCAGAAGTGTTGGTCTTGAGCAATTTCAGTTTGAAAGTCAATGGGGGACAAACAATTGCTGTTGTGGGAGTTTCTGGGTCTGGAAAGAGCACTATAATATCTTTGATAGAAAGATTTTATGATCCAGTTGCTGGGCAAATTTTTCTAGACGGAAGGGATTTAAAGCTATATAATTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTCCAGCAGGAGCCTATTATTTTCTCAACCACCATAAGGGAAAACATCCTATATGCCAGGCACAATGCCAGTGAGGCTGAGGTGAAAGAGGCAGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCCCATGGCTACGACACACATGTTGGGATGAGAGGTGTCGACTTAACTCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAGAATGCGCCTATCTTATTGTTGGATGAAGCCAGTTCATCTATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCACTGGACACTCTAGTCATGGGGAACAAGACCACTATTTTAATAGCGCACAGGGCTGCGATGATGAGACACGTAGATAACATTGTAGTACTTAATGGAGGAAGGATAGTGGAGTCGGGAACCCATGATTCATTGGTTGCAAAGAATGGCCTGTATGTCCGATTGATGCAACCTCATTTCGGTAAGGCATTGCGTCAGCATCGGCTCATTTAG 3969 0.4389 MVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYVDPSAETSASQQVELEEEIEEPEEVEPPPAAVPFSRLFACADRFDWFLMILGSVAAAAHGTALVVYLHFFAKIIQVPQQDDQFHRFKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKAISYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVVHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSAPALVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIVEAAKVAHAHAFISSLDKGYETQVGRAGIALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLSRDGLYAELLRCEEATKLPKRMPIRNYKDAAVFQIEKDSSESLREPSSPKMNKSPSLQRIAGVFRPSDGFFNSQDSPKARSPPPEMMLENSSADKEPSIKRQDSFEMRLPELPKIDVQSVNRQASNGSDPESPISPLLTSDPKNERSHSQTFSRPESHSDDISVKMDLTKDARHRGQPSLWRLAELSLAEWLYAVLGSTGAAIFGSFNPLLAYVIGMVVTAYYRIDEANHLHGEVNKWCLVIACMGFVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNETGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFVQDSAAIIVAFLIGVLLQWRLALVALATLPVLCVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNKIFIKSFLHGMAIGFGFGFSQFLLFSCNALLLWYTAICIKNGYVDSPTAMKEYMVFSFATFALVEPFGLAPYILKRRKSLVSVFEIIDRVPKIDPDDSSAVKPPNVYGSIELRNVDFCYPSRPEVLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQIFLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENILYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLVMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVESGTHDSLVAKNGLYVRLMQPHFGKALRQHRLI 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30242g00035 1322 CDD ABC_6TM_Pgp_ABCB1_D1_like 82 307 - -
Stsc30242g00035 1322 Gene3D - 1095 1316 IPR027417 -
Stsc30242g00035 1322 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1073 1310 IPR003439 GO:0005524
Stsc30242g00035 1322 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 750 1026 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30242g00035 1322 FunFam ABC transporter B family member 6 920 1070 - -
Stsc30242g00035 1322 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 332 567 IPR003439 GO:0005524
Stsc30242g00035 1322 Gene3D ABC transporter type 1, transmembrane domain 721 1082 IPR036640 GO:0005524|GO:0016020
Stsc30242g00035 1322 Gene3D - 323 575 IPR027417 -
Stsc30242g00035 1322 MobiDBLite consensus disorder prediction 593 715 - -
Stsc30242g00035 1322 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 208 299 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30242g00035 1322 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 83 206 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30242g00035 1322 FunFam ABC transporter B family member 20 322 569 - -
Stsc30242g00035 1322 Pfam ABC transporter 353 497 IPR003439 GO:0005524
Stsc30242g00035 1322 FunFam ABC transporter B family member 20 1063 1312 - -
Stsc30242g00035 1322 Gene3D ABC transporter type 1, transmembrane domain 198 313 IPR036640 GO:0005524|GO:0016020
Stsc30242g00035 1322 Gene3D ABC transporter type 1, transmembrane domain 61 197 IPR036640 GO:0005524|GO:0016020
Stsc30242g00035 1322 SUPERFAMILY ABC transporter transmembrane region 737 1058 IPR036640 GO:0005524|GO:0016020
Stsc30242g00035 1322 MobiDBLite consensus disorder prediction 1 61 - -
Stsc30242g00035 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1062 1309 IPR027417 -
Stsc30242g00035 1322 Pfam ABC transporter 1091 1239 IPR003439 GO:0005524
Stsc30242g00035 1322 Pfam ABC transporter transmembrane region 82 199 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30242g00035 1322 Pfam ABC transporter transmembrane region 758 1019 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30242g00035 1322 MobiDBLite consensus disorder prediction 673 701 - -
Stsc30242g00035 1322 FunFam ABC transporter B family member 6 690 918 - -
Stsc30242g00035 1322 CDD ABC_6TM_Pgp_ABCB1_D2_like 741 1056 - -
Stsc30242g00035 1322 SMART AAA_5 359 538 IPR003593 GO:0016887
Stsc30242g00035 1322 SMART AAA_5 1100 1287 IPR003593 GO:0016887
Stsc30242g00035 1322 MobiDBLite consensus disorder prediction 649 665 - -
Stsc30242g00035 1322 PANTHER ABC TRANSPORTER B FAMILY 742 1309 IPR039421 -
Stsc30242g00035 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 566 IPR027417 -
Stsc30242g00035 1322 SUPERFAMILY ABC transporter transmembrane region 68 307 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30242g00035 Stsc-Chr30242 140339 146678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30242g00035 193 571 Calmodulin-binding Proteins AT2G36910 38.961 2.61e-72 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30242g00035 K05658 - gmx:100799399 2037.31