Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30242g00030 ATGGTTCTATCGAACAAGAAGCTGAAGCAGAAGCTTAGAGATGTATTAGCCAAAAACCAAACCAACAACTCTGAGGTAGCTCCTGTTGATGCCCCTTCTGCTTCTCCTTCTTCCTCACATCCTCTCAAGATTCTTCTTGACTCTGCCGCCCACAAGCCCGTATTGTCCAAGAGAGAGAAACGCCGAAAGCTTCGATCTTTGGAACACCTTCAACCTGAGGCTTCTCCACAAGCTGCCGATGAAGTTGAAGGAAGCAACAAGGAAAATGGGTCAGAGGATTTGGCCAATAAGAAAAAGAATAAGAAGAGGAAGAGGAAGGTAAAGGAAGATGCTGACGTGGCTACTGAAGCTCCCAAGGAACCTGAGAAATCGACCAACAAGAAAAAGAAGAAGAAGCAGAAGAAGAAGAAAAAGAAGACCAAAACGGTGGAGCAAAACAGTTCTAATAGTGAAGGGGCTGTGCCACAAGCTACAGGGTTGAATGAGAGTAATAACAATACCAATGCTAATAGCGGGCAAGATGGTTGTGATGATCCTACAAAGGTTTATGTGGGAGGAATTCCCTATTACTCAACCGAGGATGATATTCGAAGTTATTTTGAGAGCTGTGGCACCATAACTGAAGTTGATTGCATGTGTTTTCCTGAGACTGGCAAGTTTAGAGGGATTGCCATTATCAGCTTCAAGACAGAAGCAGCGGCAAAACGTGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGTCAATAAAGATAAAGTATCAGATTTTGCTCCAAAGATTGTGGAAGGATACAATAGAATATACGTTGGGAATTTGTCATGGGATATAACAGAGGAAGAACTCAAAAAATTCTTCTCGAATTGCAACATAGCATCACTGCGATTTGGTATGGACAAGGATACTGGAGAATTCCGAGGGTATGCGCATGTGGATTTCAGCGATAGTCAGTCGCTAAAAACAGCTCTTACAATGGACCAAAAGGTTTTGTCTGGGAGACCTGTCAAGATAAGTTGTGCAGTTCCTTTGAAGAAGAAACCAACAACGAATACAAGCGCTGCGACTACAACTACAACTGCAAGTAATGGGGTTGATGGCGAGAAATCAGCTTCAACTGTTCCGGCCGTAAGTGGAAAGATAAAGAGGAGGACATGCTATGAGTGTGGGGAAAAAGGACATCTTTCATCAGACTGCCCAAAGAAACAAACTATCGATTCAACTTCAACCTGA 1263 0.4315 MVLSNKKLKQKLRDVLAKNQTNNSEVAPVDAPSASPSSSHPLKILLDSAAHKPVLSKREKRRKLRSLEHLQPEASPQAADEVEGSNKENGSEDLANKKKNKKRKRKVKEDADVATEAPKEPEKSTNKKKKKKQKKKKKKTKTVEQNSSNSEGAVPQATGLNESNNNTNANSGQDGCDDPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMCFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRVNKDKVSDFAPKIVEGYNRIYVGNLSWDITEEELKKFFSNCNIASLRFGMDKDTGEFRGYAHVDFSDSQSLKTALTMDQKVLSGRPVKISCAVPLKKKPTTNTSAATTTTTASNGVDGEKSASTVPAVSGKIKRRTCYECGEKGHLSSDCPKKQTIDSTST 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30242g00030 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 257 IPR000504 GO:0003723
Stsc30242g00030 420 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 90 254 - -
Stsc30242g00030 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 248 IPR000504 GO:0003723
Stsc30242g00030 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 347 IPR000504 GO:0003723
Stsc30242g00030 420 SMART c2hcfinal6 395 411 IPR001878 GO:0003676|GO:0008270
Stsc30242g00030 420 ProSiteProfiles Zinc finger CCHC-type profile. 396 411 IPR001878 GO:0003676|GO:0008270
Stsc30242g00030 420 MobiDBLite consensus disorder prediction 358 381 - -
Stsc30242g00030 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 353 IPR000504 GO:0003723
Stsc30242g00030 420 MobiDBLite consensus disorder prediction 15 42 - -
Stsc30242g00030 420 SUPERFAMILY Retrovirus zinc finger-like domains 389 414 IPR036875 GO:0003676|GO:0008270
Stsc30242g00030 420 MobiDBLite consensus disorder prediction 1 179 - -
Stsc30242g00030 420 MobiDBLite consensus disorder prediction 125 141 - -
Stsc30242g00030 420 Gene3D - 92 269 IPR012677 -
Stsc30242g00030 420 SMART rrm1_1 278 349 IPR000504 GO:0003723
Stsc30242g00030 420 SMART rrm1_1 181 253 IPR000504 GO:0003723
Stsc30242g00030 420 MobiDBLite consensus disorder prediction 106 124 - -
Stsc30242g00030 420 Pfam Zinc knuckle 394 411 IPR001878 GO:0003676|GO:0008270
Stsc30242g00030 420 MobiDBLite consensus disorder prediction 401 420 - -
Stsc30242g00030 420 SUPERFAMILY RNA-binding domain, RBD 159 261 IPR035979 GO:0003676
Stsc30242g00030 420 Gene3D - 372 419 - -
Stsc30242g00030 420 MobiDBLite consensus disorder prediction 145 175 - -
Stsc30242g00030 420 CDD RRM1_PHIP1 182 253 IPR034361 -
Stsc30242g00030 420 MobiDBLite consensus disorder prediction 358 379 - -
Stsc30242g00030 420 SUPERFAMILY RNA-binding domain, RBD 271 357 IPR035979 GO:0003676
Stsc30242g00030 420 Gene3D - 272 362 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30242g00030 Stsc-Chr30242 120526 123053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30242g00030 166 351 Eukaryotic Initiation Factors Gene Family AT3G16380 28.718 3.23e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30242g00030 - - adu:107467708 627.861