Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30242g00030 | ATGGTTCTATCGAACAAGAAGCTGAAGCAGAAGCTTAGAGATGTATTAGCCAAAAACCAAACCAACAACTCTGAGGTAGCTCCTGTTGATGCCCCTTCTGCTTCTCCTTCTTCCTCACATCCTCTCAAGATTCTTCTTGACTCTGCCGCCCACAAGCCCGTATTGTCCAAGAGAGAGAAACGCCGAAAGCTTCGATCTTTGGAACACCTTCAACCTGAGGCTTCTCCACAAGCTGCCGATGAAGTTGAAGGAAGCAACAAGGAAAATGGGTCAGAGGATTTGGCCAATAAGAAAAAGAATAAGAAGAGGAAGAGGAAGGTAAAGGAAGATGCTGACGTGGCTACTGAAGCTCCCAAGGAACCTGAGAAATCGACCAACAAGAAAAAGAAGAAGAAGCAGAAGAAGAAGAAAAAGAAGACCAAAACGGTGGAGCAAAACAGTTCTAATAGTGAAGGGGCTGTGCCACAAGCTACAGGGTTGAATGAGAGTAATAACAATACCAATGCTAATAGCGGGCAAGATGGTTGTGATGATCCTACAAAGGTTTATGTGGGAGGAATTCCCTATTACTCAACCGAGGATGATATTCGAAGTTATTTTGAGAGCTGTGGCACCATAACTGAAGTTGATTGCATGTGTTTTCCTGAGACTGGCAAGTTTAGAGGGATTGCCATTATCAGCTTCAAGACAGAAGCAGCGGCAAAACGTGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGTCAATAAAGATAAAGTATCAGATTTTGCTCCAAAGATTGTGGAAGGATACAATAGAATATACGTTGGGAATTTGTCATGGGATATAACAGAGGAAGAACTCAAAAAATTCTTCTCGAATTGCAACATAGCATCACTGCGATTTGGTATGGACAAGGATACTGGAGAATTCCGAGGGTATGCGCATGTGGATTTCAGCGATAGTCAGTCGCTAAAAACAGCTCTTACAATGGACCAAAAGGTTTTGTCTGGGAGACCTGTCAAGATAAGTTGTGCAGTTCCTTTGAAGAAGAAACCAACAACGAATACAAGCGCTGCGACTACAACTACAACTGCAAGTAATGGGGTTGATGGCGAGAAATCAGCTTCAACTGTTCCGGCCGTAAGTGGAAAGATAAAGAGGAGGACATGCTATGAGTGTGGGGAAAAAGGACATCTTTCATCAGACTGCCCAAAGAAACAAACTATCGATTCAACTTCAACCTGA | 1263 | 0.4315 | MVLSNKKLKQKLRDVLAKNQTNNSEVAPVDAPSASPSSSHPLKILLDSAAHKPVLSKREKRRKLRSLEHLQPEASPQAADEVEGSNKENGSEDLANKKKNKKRKRKVKEDADVATEAPKEPEKSTNKKKKKKQKKKKKKTKTVEQNSSNSEGAVPQATGLNESNNNTNANSGQDGCDDPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMCFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRVNKDKVSDFAPKIVEGYNRIYVGNLSWDITEEELKKFFSNCNIASLRFGMDKDTGEFRGYAHVDFSDSQSLKTALTMDQKVLSGRPVKISCAVPLKKKPTTNTSAATTTTTASNGVDGEKSASTVPAVSGKIKRRTCYECGEKGHLSSDCPKKQTIDSTST | 420 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30242g00030 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 180 | 257 | IPR000504 | GO:0003723 | |
Stsc30242g00030 | 420 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 90 | 254 | - | - | |
Stsc30242g00030 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 182 | 248 | IPR000504 | GO:0003723 | |
Stsc30242g00030 | 420 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 279 | 347 | IPR000504 | GO:0003723 | |
Stsc30242g00030 | 420 | SMART | c2hcfinal6 | 395 | 411 | IPR001878 | GO:0003676|GO:0008270 | |
Stsc30242g00030 | 420 | ProSiteProfiles | Zinc finger CCHC-type profile. | 396 | 411 | IPR001878 | GO:0003676|GO:0008270 | |
Stsc30242g00030 | 420 | MobiDBLite | consensus disorder prediction | 358 | 381 | - | - | |
Stsc30242g00030 | 420 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 277 | 353 | IPR000504 | GO:0003723 | |
Stsc30242g00030 | 420 | MobiDBLite | consensus disorder prediction | 15 | 42 | - | - | |
Stsc30242g00030 | 420 | SUPERFAMILY | Retrovirus zinc finger-like domains | 389 | 414 | IPR036875 | GO:0003676|GO:0008270 | |
Stsc30242g00030 | 420 | MobiDBLite | consensus disorder prediction | 1 | 179 | - | - | |
Stsc30242g00030 | 420 | MobiDBLite | consensus disorder prediction | 125 | 141 | - | - | |
Stsc30242g00030 | 420 | Gene3D | - | 92 | 269 | IPR012677 | - | |
Stsc30242g00030 | 420 | SMART | rrm1_1 | 278 | 349 | IPR000504 | GO:0003723 | |
Stsc30242g00030 | 420 | SMART | rrm1_1 | 181 | 253 | IPR000504 | GO:0003723 | |
Stsc30242g00030 | 420 | MobiDBLite | consensus disorder prediction | 106 | 124 | - | - | |
Stsc30242g00030 | 420 | Pfam | Zinc knuckle | 394 | 411 | IPR001878 | GO:0003676|GO:0008270 | |
Stsc30242g00030 | 420 | MobiDBLite | consensus disorder prediction | 401 | 420 | - | - | |
Stsc30242g00030 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 159 | 261 | IPR035979 | GO:0003676 | |
Stsc30242g00030 | 420 | Gene3D | - | 372 | 419 | - | - | |
Stsc30242g00030 | 420 | MobiDBLite | consensus disorder prediction | 145 | 175 | - | - | |
Stsc30242g00030 | 420 | CDD | RRM1_PHIP1 | 182 | 253 | IPR034361 | - | |
Stsc30242g00030 | 420 | MobiDBLite | consensus disorder prediction | 358 | 379 | - | - | |
Stsc30242g00030 | 420 | SUPERFAMILY | RNA-binding domain, RBD | 271 | 357 | IPR035979 | GO:0003676 | |
Stsc30242g00030 | 420 | Gene3D | - | 272 | 362 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30242g00030 | Stsc-Chr30242 | 120526 | 123053 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30242g00030 | 166 | 351 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 28.718 | 3.23e-08 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30242g00030 | - | - | adu:107467708 | 627.861 |