Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30242g00027 ATGATGATGATGATGATGAAGAGAGAAAGTCAAGTTGAAAGCAGCATGGCCATGGCCAACTATCTCATGCTACTTTCTGGCGCTGCTGGAGGAGTTGACAGAACCACCACCACCACCACCACCACCAGCAACCGTGTATTCGAGTGCAAGACATGTAACAGGCAATTCTCGTCGTTTCAGGCACTGGGAGGCCACCGTGCAAGCCACAAGAAGCCAAGGCTCACCAACGGAGAAGACAGCAGCAGTGATGGCAGCGATGGCTCTCCGCCAAAGCCTAAGACTCACGAGTGCTCCGTTTGCGGCCTGGAGTTCGCTATTGGCCAAGCTTTGGGTGGCCACATGAGGCGTCACAGAGCACAACCACCACCACCTCCTCCTTCAGACGCCAATGAAAATAATAGTAATCTTAAAAGAAAGAGACAAGTTATGTTTGTGGATCTGAACTTGACTCCCTTTGAGAATGATTTGGCATTCTTGAAGATTGGACAACCAACTCGTCCTCATAACTTGGTCCATTGTTTGTAA 525 0.4952 MMMMMMKRESQVESSMAMANYLMLLSGAAGGVDRTTTTTTTTSNRVFECKTCNRQFSSFQALGGHRASHKKPRLTNGEDSSSDGSDGSPPKPKTHECSVCGLEFAIGQALGGHMRRHRAQPPPPPPSDANENNSNLKRKRQVMFVDLNLTPFENDLAFLKIGQPTRPHNLVHCL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30242g00027 174 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Stsc30242g00027 174 Pfam C2H2-type zinc finger 46 72 - -
Stsc30242g00027 174 Pfam C2H2-type zinc finger 95 120 - -
Stsc30242g00027 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Stsc30242g00027 174 PANTHER ZINC FINGER PROTEIN ZAT5 12 154 - -
Stsc30242g00027 174 MobiDBLite consensus disorder prediction 62 95 - -
Stsc30242g00027 174 SMART c2h2final6 95 117 IPR013087 -
Stsc30242g00027 174 SMART c2h2final6 47 69 IPR013087 -
Stsc30242g00027 174 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Stsc30242g00027 174 MobiDBLite consensus disorder prediction 111 134 - -
Stsc30242g00027 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Stsc30242g00027 174 Gene3D Classic Zinc Finger 45 117 - -
Stsc30242g00027 174 SUPERFAMILY beta-beta-alpha zinc fingers 45 117 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30242g00027 Stsc-Chr30242 102831 103571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30242g00027 6 159 C2H2 Transcription Factor Family AT2G37430 44.848 1.57e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30242g00027 zf-C2H2_6 3.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30242g00027 - - gmx:100500371 188.348