Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30242g00025 ATGTCTTTTCAGCATAAAAACTTCTGGATGGCACAGGATGCTGGCTGCTTAACTGAAGAAAATATAGGATATGATAATGCTTCTAGAACTGAACAAAAGCGTGGTCATCAGTGGTTTATGGATTCGGGTGAACTCCAAGTATTCAACAACATTAAGAGGCAGGCAGTTGAATCTGTTAATGGCAATCCAGTTTCAGGAGTTTCTCATGTAAATATTCCTCCATGGGACATTGATTCAGGATTTCACTCAGTTACAGGACAATTTTCTGATCGTCTGTTTGGGTCCGAGCTTCGAGCTGTCAATATGGTTGATAAGAACATGGCATCAATAAGAAGTGGAAACTTGAACATAGGAAGCAAGGATTTTGAGAATCAATATGGTAATGATCCATCAGTGGGTTTATCAATATCCCATAACATTGAGGACCCTTCACCATGTCTCAATTTTGGTGGTGTCAGAAAAGTCAAAATTAATGAAGTAAGAGATTCTGACAGTTGCATCCCTTCGTCCATGGGGAACTCCTACGGTAGGGCTGATAATAGTTTAATGTCAATAGGTTCGGGGTATAGTAAGAATGATGGAAACATATCATTGGGCCCAACCTATAACAATATAAATGATAATTCCATCTCTAGGCAGACCTCAATAAGTAAGACCAATGGCAACCTTGTTCCAATGGATCATGCCTTCAGTAAAGGGGATGGTAGTTTTATATTGATGGGGCACAACTATGGCAAAGGGGATGAAAATATTTTATCAATGAATCAGCCCTTTGACAGGGGAGATGGAAATTTCATATCAATTGGCCACACATATGACAAGGAAGACAACAATATGATATCTCTGGGTACCTCTTATAACAAGGGGCATGAGAACTTTATATCAATGGGTCCAACCTACAGTAAATCTGGAGAAAATTTCATAAATATTGGTGCTTCATATGACAAGGGTACTGATCATATAATGTCAATAGGTACAACATATGATAATGTAGATTCAAACATTGCATCATCGGTTTGTTCGTATGAGAATGGAGATTCCAACTCCTTACCAGTGGCCCCAAACCATAGTAAGGGTGAGGCAAGTACAATATCTTTTGGAAGTGTTCAAAAGGGCTGCGAGCAAAATCTTAATGGAGGCATCATTAGTGGCTATGATCTTTCAATGGGCAACCAGACTTTACCTCATGGTTTGGATGGGCAGAAGACTGTGAGTGAGTCAAACTCTGAACTGCCTACGGATAGCACTCCAAAATCCAATCCTAATACTGATTCTACCCTTAAGAATAAATATCCAAAGACAACCAAGAAGGCTTCTGCTAACAACTTTCCTTCCAATGTTAAAAGTTTGTTATCAACTGGTATTTTTGATGGTGTTCCTATTAAATATATATCCTGGTCAAGAGAGAGAACTCTCAGAGGAATCATAAAGGGAACTGGATATTTGTGTTCATGTGATGATTGCAAACAGTCCAAGGTTCTCAATGCTTATGAATTTGAGCGGCATGCTGGTGCCAAGACCAAACACCCTAACAATCACATATATTTTGACAATGGAAAAACCATCTATGCTGTTGTTCAAGAACTGAAAAGCTCTCCTCAGGAGATGCTTTTTGATGCAATTCAAAGTGCGACTGGCTCTTCCATCAACCAGAAGAACTTTCGCATTTGGAAAGGTAATGGTAGTTTTAGTTGCATCGTTGGGGTTAGGAGCAGAAACGCTACGATGTAA 1731 0.3934 MSFQHKNFWMAQDAGCLTEENIGYDNASRTEQKRGHQWFMDSGELQVFNNIKRQAVESVNGNPVSGVSHVNIPPWDIDSGFHSVTGQFSDRLFGSELRAVNMVDKNMASIRSGNLNIGSKDFENQYGNDPSVGLSISHNIEDPSPCLNFGGVRKVKINEVRDSDSCIPSSMGNSYGRADNSLMSIGSGYSKNDGNISLGPTYNNINDNSISRQTSISKTNGNLVPMDHAFSKGDGSFILMGHNYGKGDENILSMNQPFDRGDGNFISIGHTYDKEDNNMISLGTSYNKGHENFISMGPTYSKSGENFINIGASYDKGTDHIMSIGTTYDNVDSNIASSVCSYENGDSNSLPVAPNHSKGEASTISFGSVQKGCEQNLNGGIISGYDLSMGNQTLPHGLDGQKTVSESNSELPTDSTPKSNPNTDSTLKNKYPKTTKKASANNFPSNVKSLLSTGIFDGVPIKYISWSRERTLRGIIKGTGYLCSCDDCKQSKVLNAYEFERHAGAKTKHPNNHIYFDNGKTIYAVVQELKSSPQEMLFDAIQSATGSSINQKNFRIWKGNGSFSCIVGVRSRNATM 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30242g00025 576 SUPERFAMILY Porins 172 346 - -
Stsc30242g00025 576 MobiDBLite consensus disorder prediction 392 443 - -
Stsc30242g00025 576 PANTHER AUTOIMMUNE REGULATOR 8 532 - -
Stsc30242g00025 576 Pfam Tify domain binding domain 474 529 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30242g00025 Stsc-Chr30242 93478 97075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30242g00025 433 560 PHD Transcription Factor Family AT3G53680 54.688 3.22e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30242g00025 - - gmx:100787520 822.387