Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30242g00024 ATGTCTTTTCAGCATAAAAACTTCTGGATGGCACAGGATGCTGGCTGCTTAACTGAAGAAAATATAGGATATGATAATGCTTCTAGAACTGAACAAAAGCGTGGTCATCAGTGGTTTATGGATTCGGGTGAACTCCAAGTATTCAACAACATTAAGAGGCAGGCAGTTGAATCTGTTAATGGCAATCCAGTTTCAGGAGTTTCTCATGTAAATATTCCTCCATGGGACATTGATTCAGGATTTCACTCAGTTACAGGACAATTTTCTGATCGTCTGTTTGGGTCCGAGCTTCGAGCTGTCAATATGGTTGATAAGAACATGGCATCAATAAGAAGTGGAAACTTGAACATAGGAAGCAAGGATTTTGAGAATCAATATGGTAATGATCCATCAGTGGGTTTATCAATATCCCATAACATTGAGGACCCTTCACCATGTCTCAATTTTGGTGGTGTCAGAAAAGTCAAAATTAATGAAGTAAGAGATTCTGACAGTTGCATCCCTTCGTCCATGGGGAACTCCTACGGTAGGGCTGATAATAGTTTAATGTCAATAGGTTCGGGGTATAGTAAGAATGATGGAAACATATCATTGGGCCCAACCTATAACAATATAAATGATAATTCCATCTCTAGGCAGACCTCAATAAGTAAGACCAATGGCAACCTTGTTCCAATGGATCATGCCTTCAGTAAAGGGGATGGTAGTTTTATATTGATGGGGCACAACTATGGCAAAGGGGATGAAAATATTTTATCAATGAATCAGCCCTTTGACAGGGGAGATGGAAATTTCATATCAATTGGCCACACATATGACAAGGAAGACAACAATATGATATCTCTGGGTACCTCTTATAACAAGGGGCATGAGAACTTTATATCAATGGGTCCAACCTACAGTAAATCTGGAGAAAATTTCATAAATATTGGTGCTTCATATGACAAGGGTACTGATCATATAATGTCAATAGGTACAACATATGATAATGTAGATTCAAACATTGCATCATCGGTTTGTTCGTATGAGAATGGAGATTCCAACTCCTTACCAGTGGCCCCAAACCATAGTAAGGGTGAGGCAAGTACAATATCTTTTGGAAGTGTTCAAAAGGGCTGCGAGCAAAATCTTAATGGAGGCATCATTAGTGGCTATGATCTTTCAATGGGCAACCAGACTTTACCTCATGGTTTGGATGGGCAGAAGACTGTGAGTGAGTCAAACTCTGAACTGCCTACGGATAGCACTCCAAAATCCAATCCTAATACTGATTCTACCCTTAAGAATAAATATCCAAAGACAACCAAGAAGGCTTCTGCTAACAACTTTCCTTCCAATGTTAAAAGTTTGTTATCAACTGGTATTTTTGATGGTGTTCCTATTAAATATATATCCTGGTCAAGAGAGAGAACTCTCAGAGGAATCATAAAGGGAACTGGATATTTGTGTTCATGTGATGATTGCAAACAGTCCAAGGTTCTCAATGCTTATGAATTTGAGCGGCATGCTGGTGCCAAGACCAAACACCCTAACAATCACATATATTTTGACAATGGAAAAACCATCTATGCTGTTGTTCAAGAACTGAAAAGCTCTCCTCAGGAGATGCTTTTTGATGCAATTCAAAGTGCGACTGGCTCTTCCATCAACCAGAAGAACTTTCGCATTTGGAAAGCATCATATCAAGCTGCAACTCGGGAGCTTCAGCGTATCTATGGAAAGGACGAAGTGTTCGTACCATCTTGA 1746 0.3952 MSFQHKNFWMAQDAGCLTEENIGYDNASRTEQKRGHQWFMDSGELQVFNNIKRQAVESVNGNPVSGVSHVNIPPWDIDSGFHSVTGQFSDRLFGSELRAVNMVDKNMASIRSGNLNIGSKDFENQYGNDPSVGLSISHNIEDPSPCLNFGGVRKVKINEVRDSDSCIPSSMGNSYGRADNSLMSIGSGYSKNDGNISLGPTYNNINDNSISRQTSISKTNGNLVPMDHAFSKGDGSFILMGHNYGKGDENILSMNQPFDRGDGNFISIGHTYDKEDNNMISLGTSYNKGHENFISMGPTYSKSGENFINIGASYDKGTDHIMSIGTTYDNVDSNIASSVCSYENGDSNSLPVAPNHSKGEASTISFGSVQKGCEQNLNGGIISGYDLSMGNQTLPHGLDGQKTVSESNSELPTDSTPKSNPNTDSTLKNKYPKTTKKASANNFPSNVKSLLSTGIFDGVPIKYISWSRERTLRGIIKGTGYLCSCDDCKQSKVLNAYEFERHAGAKTKHPNNHIYFDNGKTIYAVVQELKSSPQEMLFDAIQSATGSSINQKNFRIWKASYQAATRELQRIYGKDEVFVPS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30242g00024 581 PANTHER AUTOIMMUNE REGULATOR 8 532 - -
Stsc30242g00024 581 MobiDBLite consensus disorder prediction 392 443 - -
Stsc30242g00024 581 Pfam Tify domain binding domain 474 529 IPR032308 -
Stsc30242g00024 581 SUPERFAMILY Porins 172 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30242g00024 Stsc-Chr30242 93478 97075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30242g00024 433 562 PHD Transcription Factor Family AT3G53680 54.615 5.73e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30242g00024 - - gmx:100782217 862.833