Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30242g00020 ATGGTGAAGATGATGGAATGGCAGAAGCAGTTGCATAATAACAATGACAAGGGAGACAACAATAACAATAACATGATGTATGTGAAGGTCATGACTGATGACCAGTTAGAAACTCTCAGGAAGCAGATTGCTGTTTATGCCACTCTCTGTGAACAGCTTGTTGAGATGCATAGAACCCTCTCCTCTCACCACGATCTTGCAGGAGTTCGGGTGGGAAATATATACTGTGATCCATTGATGACATCATCAGGGCAGAAAATAACATCTAGGCAGAGGTGGACACCAACACCATTGCAGCTTCAAATTCTTGAGCGAATATTTGATCAAGGCAATGGAACTCCAAGCAAGGAGAAGATTAAAGAGATCACTGCTGAACTCAGCCACCATGGCCAGATTTCTGAAACAAATGTGTACAATTGGTTCCAGAATAGGCGTGCAAGATCAAAGAGGAAGCTTCAAAACAATGCGGCACCTGCTACTGTTACTGAATCAGAGGTAGATGCTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCAGAGGAGTTAATTGGTTCCCAACAACAACAGCATACTACAGGGTCTGAAAAGTTGTGCTTTCATCAGAACAATGAGTTGCAGTACTTGAATCAACATCCAAACAACAACAACAGCAAATCAGATCACATTTTCACAACATCAGATGGCACTCTAAGACCCTCAAGAAATTTTAGCCGTATGCCTGTTTTTGTTGATGTTCTATCAAACTCAAGGGGAGACTATCTAGATGGGAAAATGGAAGTAGGTGGTGGTGGGATGTATAATTTATATCATCAAGCAGGAGACTATAATTTGGGGGTTGACACTCGACATACATGA 855 0.4164 MVKMMEWQKQLHNNNDKGDNNNNNMMYVKVMTDDQLETLRKQIAVYATLCEQLVEMHRTLSSHHDLAGVRVGNIYCDPLMTSSGQKITSRQRWTPTPLQLQILERIFDQGNGTPSKEKIKEITAELSHHGQISETNVYNWFQNRRARSKRKLQNNAAPATVTESEVDAEVDSKDKKTKPEELIGSQQQQHTTGSEKLCFHQNNELQYLNQHPNNNNSKSDHIFTTSDGTLRPSRNFSRMPVFVDVLSNSRGDYLDGKMEVGGGGMYNLYHQAGDYNLGVDTRHT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30242g00020 284 ProSiteProfiles 'Homeobox' domain profile. 86 151 IPR001356 GO:0003677
Stsc30242g00020 284 Gene3D - 91 157 - -
Stsc30242g00020 284 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 275 IPR044559 GO:0003700
Stsc30242g00020 284 SMART HOX_1 88 155 IPR001356 GO:0003677
Stsc30242g00020 284 MobiDBLite consensus disorder prediction 166 181 - -
Stsc30242g00020 284 MobiDBLite consensus disorder prediction 149 194 - -
Stsc30242g00020 284 Pfam Homeodomain 90 150 IPR001356 GO:0003677
Stsc30242g00020 284 CDD homeodomain 90 151 IPR001356 GO:0003677
Stsc30242g00020 284 MobiDBLite consensus disorder prediction 209 228 - -
Stsc30242g00020 284 SUPERFAMILY Homeodomain-like 88 154 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30242g00020 Stsc-Chr30242 76567 78458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30242g00020 4 277 Wox Gene Family AT4G35550 47.333 3.80e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc30242g00020 Homeodomain 9.9e-19 CL0123