Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30242g00015 ATGAATTGTCTTCTAGTTTGTCAATCTCCATTGTGGATAGTGACCATTGTGTTCTACACATGCATTTTGATCCCATTGATGCAACTCAAGAAGGCAGTGTTTGGTTGTTACATGGCTTTATTTTTGGGTTGTGAAATCACCAAAGGCATGTCCAAGGAGATTCAATTCCCGGAAATTCCTTCTTTGCCTGTGGCCAGGTTCCAGGATTTGAAGTGTCTAAGAGAAGAACATGAAGAGAGTTCAGAGGAGACTTGCTCCATTTGCTTGGTGGAGTTTGAAGATGAAGATGCTGTGAGCAAGCTAAGAAGATGCAACCACATATTCCATCTCAGTTGCATTGAGCAATGGATAGATCGCAATCAATTCTCTTGCCCACTTTGTAGATCCTTTTTATTTACTCATGATTAA 408 0.4044 MNCLLVCQSPLWIVTIVFYTCILIPLMQLKKAVFGCYMALFLGCEITKGMSKEIQFPEIPSLPVARFQDLKCLREEHEESSEETCSICLVEFEDEDAVSKLRRCNHIFHLSCIEQWIDRNQFSCPLCRSFLFTHD 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30242g00015 135 SMART ring_2 85 127 IPR001841 -
Stsc30242g00015 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 131 IPR013083 -
Stsc30242g00015 135 Pfam Ring finger domain 84 128 IPR001841 -
Stsc30242g00015 135 ProSiteProfiles Zinc finger RING-type profile. 85 128 IPR001841 -
Stsc30242g00015 135 PANTHER RING ZINC FINGER PROTEIN-RELATED 50 131 - -
Stsc30242g00015 135 SUPERFAMILY RING/U-box 74 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30242g00015 Stsc-Chr30242 52260 52667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30242g00015 1 133 C3H Transcription Factor Family AT4G38140 39.850 2.07e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30242g00015 - - pvu:PHAVU_007G012000g 170.244