Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30242g00004 ATGGATGATTTTAGGAAAACTTTTAAGGAGGCAAACCCTGATTCAAAGGATGTTAAGAGGGTTGGTAAAGAGGGTGGTGAGAAATGGAGGTCCATGACTGATAAAGAGAAGAAGCCTTATTTGGACAAAGTTGCCGAGCTTAAAGCAGAATATGAGAAGGCTATGGAAAGTTATAATGCTGCTGAAGCAGAAGGAGAAGAAGGAGGAGAAGCAGAAGGAGAAGAAGGAGGAGAAGAAGAAGGAGAGCATGAAGAGGGGGCTGATGACAAATCTGATAAGGAAGAAGCTGCTGCAGGTGAAGATGAGGAGCTGACTGATGAAGAGTAA 327 0.4343 MDDFRKTFKEANPDSKDVKRVGKEGGEKWRSMTDKEKKPYLDKVAELKAEYEKAMESYNAAEAEGEEGGEAEGEEGGEEEGEHEEGADDKSDKEEAAAGEDEELTDEE 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30242g00004 108 Gene3D High mobility group box domain 1 62 IPR036910 -
Stsc30242g00004 108 MobiDBLite consensus disorder prediction 55 108 - -
Stsc30242g00004 108 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 94 - -
Stsc30242g00004 108 SUPERFAMILY HMG-box 2 60 IPR036910 -
Stsc30242g00004 108 Pfam HMG (high mobility group) box 1 59 IPR009071 -
Stsc30242g00004 108 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1 59 IPR009071 -
Stsc30242g00004 108 MobiDBLite consensus disorder prediction 1 41 - -
Stsc30242g00004 108 MobiDBLite consensus disorder prediction 63 85 - -
Stsc30242g00004 108 Coils Coil 41 64 - -
Stsc30242g00004 108 SMART hmgende2 1 60 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30242g00004 Stsc-Chr30242 7745 8655 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc30242g00004 HMG_box 9.1e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30242g00004 K25507 - gmx:100810345 115.931