Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30242g00003 ATGGCGAAGGGAAAGAACTCATCGCAGGGGAGTAAGAGAGTGGACGCCGTCGATTCTCGATCTTCGTCTGTTCTTGTTCGCGCCAAGGATGGCAGCGCCTTCACCAAATGCGACGAGTGCAAGAAGGATGTTCCCGTTGCGCTCATCAGCATGCATAGTTGCAGCCACGAAGCCAAAATCAAAATGAAGCTCGATGCAACAATTGTGGAACAGCCTTCTCAAGCTAAGAAATCAGAGAGGAAGAAGCCGAAATCTAATGAACCAAAGGCTAAAAGAGCGAAAGCTGAGAAGACGAAGAAGGAGAAAGATCCAAACAAGCCGAAGCGTCCTCCTACGGCATTCTTTGTCTTCATGGATGATTTTAGGAAAACTTTTAAGGAGGCAAACCCTGATTCAAAGGATGTTAAGAGGGTTGGTAAAGAGGGTGGTGAGAAATGGAGGTCCATGACTGATAAAGAGAAGAAGCCTTATTTGGACAAAGTTGCCGAGCTTAAAGCAGAATATGAGAAGGCTATGGAAAGTTATAATGCTGCTGAAGCAGAAGGAGAAGAAGGAGGAGAAGCAGAAGGAGAAGAAGGAGGAGAAGAAGAAGGAGAGCATGAAGAGGGGGCTGATGACAAATCTGATAAGGAAGAAGCTGCTGCAGGTGAAGATGAGGAGCTGACTGATGAAGAGTAA 678 0.4631 MAKGKNSSQGSKRVDAVDSRSSSVLVRAKDGSAFTKCDECKKDVPVALISMHSCSHEAKIKMKLDATIVEQPSQAKKSERKKPKSNEPKAKRAKAEKTKKEKDPNKPKRPPTAFFVFMDDFRKTFKEANPDSKDVKRVGKEGGEKWRSMTDKEKKPYLDKVAELKAEYEKAMESYNAAEAEGEEGGEAEGEEGGEEEGEHEEGADDKSDKEEAAAGEDEELTDEE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30242g00003 225 MobiDBLite consensus disorder prediction 74 108 - -
Stsc30242g00003 225 Gene3D High mobility group box domain 92 176 IPR036910 -
Stsc30242g00003 225 FunFam high mobility group B protein 7 isoform X1 102 182 - -
Stsc30242g00003 225 CDD HMG-box_AtHMGB1-like 108 168 - -
Stsc30242g00003 225 MobiDBLite consensus disorder prediction 69 114 - -
Stsc30242g00003 225 MobiDBLite consensus disorder prediction 126 155 - -
Stsc30242g00003 225 MobiDBLite consensus disorder prediction 172 225 - -
Stsc30242g00003 225 Pfam HMG (high mobility group) box 107 176 IPR009071 -
Stsc30242g00003 225 MobiDBLite consensus disorder prediction 1 18 - -
Stsc30242g00003 225 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 107 176 IPR009071 -
Stsc30242g00003 225 MobiDBLite consensus disorder prediction 180 202 - -
Stsc30242g00003 225 SUPERFAMILY HMG-box 98 177 IPR036910 -
Stsc30242g00003 225 SMART hmgende2 106 177 IPR009071 -
Stsc30242g00003 225 MobiDBLite consensus disorder prediction 1 25 - -
Stsc30242g00003 225 Coils Coil 158 181 - -
Stsc30242g00003 225 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 12 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30242g00003 Stsc-Chr30242 7408 8655 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc30242g00003 HMG_box 2.5e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30242g00003 K25507 - gmx:100306558 259.996