Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30241g00016 ATGGAACTTAGTTTAAAGCACCAAGTTGGTCTCATATGTGTCATATTACTCTTACCAGCACTATGTAGCTCACAAGACTCTTTCACTGATTCCAGAGCAACCTATTATGGCAGCCCTGATTGCTTTGGCAATCCAAAGGGAGCTTGTGGGTTTGGAGAATATGGAAGAACAGTCAATGATGGCAGTGTTGCAGGCGTGTCTAGGCTATGGAGGAATGGAACTGGATGTGGTGCATGCTACCAGGCAAGGTGCAAAATAGAGCAATACTGCGACGAGGAAGGAACGTACGTGGTGGTAACAGACTACGGCGAAGGAGACAGAACTGACTTCATTATGAGCCCACGCGCCTACAAGAATTTGGCACGAAACGACGATGCTGCAGCTGCAGAGTTATTCAAATATGGTGTGGTTGACATTGAATACCGAAGGGTCCCTTGTAGATATGAAGGCTACAACATTGTCTTTAAGGTCCATGAACGTAGCAAGAATCCTGAATACTTTGCTGTTGTCGTCCTCTTTGTTGATGGTGCTTATGATGTCACTGCTGTTCAGTTGTGGCAAGAAGATTGCCAACAGTGGGTGGAAATGAGGAGGGTTTATGGGGCAGTGTTTGATTATGCGAACCCACCAAGTGGTGAAATCAATTTGAGGTTCCAAGTGAGTGGCACTGCAGGTGTGTATTGGGTGCAATCAAAGAATGCTATTCCTAGTGATTGGACTGCTGGAGCTGCTTATGACTCACAGATTCAGCTTACTTAA 759 0.4559 MELSLKHQVGLICVILLLPALCSSQDSFTDSRATYYGSPDCFGNPKGACGFGEYGRTVNDGSVAGVSRLWRNGTGCGACYQARCKIEQYCDEEGTYVVVTDYGEGDRTDFIMSPRAYKNLARNDDAAAAELFKYGVVDIEYRRVPCRYEGYNIVFKVHERSKNPEYFAVVVLFVDGAYDVTAVQLWQEDCQQWVEMRRVYGAVFDYANPPSGEINLRFQVSGTAGVYWVQSKNAIPSDWTAGAAYDSQIQLT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30241g00016 252 Pfam Lytic transglycolase 63 141 IPR009009 -
Stsc30241g00016 252 Gene3D - 147 248 IPR036749 -
Stsc30241g00016 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Stsc30241g00016 252 PANTHER EXPANSIN-B3 17 250 - -
Stsc30241g00016 252 SUPERFAMILY Barwin-like endoglucanases 13 150 IPR036908 -
Stsc30241g00016 252 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Stsc30241g00016 252 Pfam Expansin C-terminal domain 153 236 IPR007117 -
Stsc30241g00016 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Stsc30241g00016 252 CDD DPBB_EXLB_N 29 146 - -
Stsc30241g00016 252 Gene3D - 19 146 IPR036908 -
Stsc30241g00016 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Stsc30241g00016 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Stsc30241g00016 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Stsc30241g00016 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Stsc30241g00016 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30241g00016 Stsc-Chr30241 147256 149384 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30241g00016 5 252 Expansin Gene Family AT4G17030 60.474 6.48e-115 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30241g00016 - - gmx:100779487 449.129