Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30241g00015 ATGGTGAATAAGCGTTACAGAGTTCCTGCGTTTCGTGATTTCCCAGAAGGGTGTGCCACAAACCCTACAAGAACCGCTGCAAATGTTGTCTCTGGGAACAAGTATAAACGGGTTCCAGGTTTTAGGGATTTTCCTCCTTGTTGTGGACCAAATCTTACTGAAGGTGAGGGTGAATCTCCAAATGGGGCTTCTTCTTCTTTGGAGTATCAACAAGATCTTGATCATGACAATGCATTAATGGAAAGGGAATCAGCAATTGATGCAGAAGATGAAGAACAGGTGGAAAAGAATGTTCTTTGTGATGGTGGTGGAAAGGTGCTGGATTTAGTTCAAGCTGATTCTGAAAGGAATAATAATGGTGTGGAAAAATTGAAGAAGGTTGAAATGAATTCTAATGATTTGAAGGTTGCTTCTCGGAGGCAAGTGGTGCTAGCATTGATGTCTGAATCTGAATGTCCATGGAGGAATCCTGCAAAAAGAAACGGAAGGAAACTCTCTTTTCAGAAGAGAAAGGGAAATGGTTATTCTGAAAACATTGATGAATTTCAACCTGTAAAGAAACCACATGGTTCGAAGTTAAAGAATCAGGACAATGATTCTTCTACTGTGACTAGAAAAAAGGTGAGGGAAACATTGCGTCTTTTTCAAGCGGTTTATAGAAAGCTTTTGCACGGAGAAGAATCGAAGCTAGAAAGGAAGGCAAGTGGCTCTGGGAGTGTTGATTTACAAGCAGCTGAGATCCTTATGAACAAAGGGAAATATCTTAACACCAACAAGGTCTTGGGGTCTGTTCCTGGGGTTGAAGTTGGCGACGAGTTTCAGTATAGGGTAGAGCTTGCCATAGTTGGCCTTCATCAGAGTATTCAAAGTGACATAGATTATGTTATGCATAATAGGAAGACCCTCGCCATGAGTATTATCGTGCTGGGAGGCTATGGCGATGAGTCAGAAGATTCAGATGTATTGATATACACAAGTTTGGTAGGGAATAATACTGATAAGGAAGTTGAAGATCAGAAGCTGAAGCAGGGCAATAAGGCTTTAAGGAACAGCATTGAGGAAAAGAATCCTGTTAGGGTGATAAGGACCACTGAATCAATGGATGAGACGGGTAAGAAATATGTCTATGATGGACAATATTTGGTTGAAACTTGTTGGCAGGATAAGGAGCTGCAGTGTACATCGGTTCTTAGGTTTCGGCTACGGAGGATCCCGGATCAACCAAAGCCTTCTTGGAAAGAAGTAAGGAAATCTGAGAGATTGAGAGCCAAACAAGGCCTAATTGTTCAGGACGTTTCAAATGGGAAAGAGCTAGTTCCAATTTGTGCTGTCAACACCATAGATAATCAAACTGTTCCACCATTTGAGTATATCACTAGAATGATATATCCAAATTGGTGCAATCCTATTCCTCCAGAAGGCTGTGATTGTGTTGAGACATGCTCAGAATCAGAGAAATGTTCTTGTGCTGCGAAAAACGGCGGTGATATCCCATTCAACCATGATGGGGCCATTGTAGAAGCAAAGTCTCTGGTCTACGAGTGTGGAGTTTCTTGCAAGTGCCCTTCAACATGTCACAATAGAGTTAGCCAACATGGTGTGAAGTTCCAACTCCAAATCTTCAAAACCGATTCGAGAGGCTGGGGTGTGAGATCCTTGAATTCGATCCCTTCGGGGAGTTTTATCTGTGAGTATCTGGGGGAGCTTCTTGGAGAGGATGAAGCTGAAGAAAGAGTCGACAATGATGAGTATCTTTTCGATATCGGCAATAATTACCAAAACAGCCTTGCCCTTTGGGATGAACTCTCAGTGGTTATGCCTGATACACATTCCAATCCTTCTTGTGAAGTTGTGGAGGATGGTGGATTCACCATTGATGCTTTACACTATGGTAATGTTGGGAGATTCATCAACCATAGTTGCTCACCTAATCTGTATGCACAGAATGTGCTTTATGATCATGATGACAAGAGGATTCCCCATGTAATGCTGTTTGCTACTGAGAACATTCCACCATTGCAAGAGTTGACTTATGATTACAATTACAAGATAGATCAGGTTTTTGATTCTCATGGGAACATCAAAAGGAAGAACTGCTATTGTGGTTCTGTGGAATGCACTGGTAGGATGTATTGA 2136 0.4181 MVNKRYRVPAFRDFPEGCATNPTRTAANVVSGNKYKRVPGFRDFPPCCGPNLTEGEGESPNGASSSLEYQQDLDHDNALMERESAIDAEDEEQVEKNVLCDGGGKVLDLVQADSERNNNGVEKLKKVEMNSNDLKVASRRQVVLALMSESECPWRNPAKRNGRKLSFQKRKGNGYSENIDEFQPVKKPHGSKLKNQDNDSSTVTRKKVRETLRLFQAVYRKLLHGEESKLERKASGSGSVDLQAAEILMNKGKYLNTNKVLGSVPGVEVGDEFQYRVELAIVGLHQSIQSDIDYVMHNRKTLAMSIIVLGGYGDESEDSDVLIYTSLVGNNTDKEVEDQKLKQGNKALRNSIEEKNPVRVIRTTESMDETGKKYVYDGQYLVETCWQDKELQCTSVLRFRLRRIPDQPKPSWKEVRKSERLRAKQGLIVQDVSNGKELVPICAVNTIDNQTVPPFEYITRMIYPNWCNPIPPEGCDCVETCSESEKCSCAAKNGGDIPFNHDGAIVEAKSLVYECGVSCKCPSTCHNRVSQHGVKFQLQIFKTDSRGWGVRSLNSIPSGSFICEYLGELLGEDEAEERVDNDEYLFDIGNNYQNSLALWDELSVVMPDTHSNPSCEVVEDGGFTIDALHYGNVGRFINHSCSPNLYAQNVLYDHDDKRIPHVMLFATENIPPLQELTYDYNYKIDQVFDSHGNIKRKNCYCGSVECTGRMY 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30241g00015 711 ProSiteProfiles SET domain profile. 536 681 IPR001214 GO:0005515
Stsc30241g00015 711 Pfam SAD/SRA domain 261 407 IPR003105 -
Stsc30241g00015 711 MobiDBLite consensus disorder prediction 47 67 - -
Stsc30241g00015 711 SUPERFAMILY SET domain 424 688 IPR046341 -
Stsc30241g00015 711 ProSiteProfiles YDG domain profile. 262 403 IPR003105 -
Stsc30241g00015 711 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 124 711 IPR025794 GO:0016571
Stsc30241g00015 711 SMART preset_2 429 520 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc30241g00015 711 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 131 704 - -
Stsc30241g00015 711 ProSiteProfiles Post-SET domain profile. 695 711 IPR003616 -
Stsc30241g00015 711 Gene3D SET domain 426 711 IPR046341 -
Stsc30241g00015 711 ProSiteProfiles Pre-SET domain profile. 473 533 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc30241g00015 711 Gene3D - 244 425 IPR036987 -
Stsc30241g00015 711 MobiDBLite consensus disorder prediction 155 205 - -
Stsc30241g00015 711 Pfam SET domain 547 681 IPR001214 GO:0005515
Stsc30241g00015 711 SMART PostSET_3 695 711 IPR003616 -
Stsc30241g00015 711 SMART set_7 536 687 IPR001214 GO:0005515
Stsc30241g00015 711 Pfam Pre-SET motif 433 528 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc30241g00015 711 SMART G9a_1 257 407 IPR003105 -
Stsc30241g00015 711 MobiDBLite consensus disorder prediction 182 205 - -
Stsc30241g00015 711 SUPERFAMILY PUA domain-like 244 416 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30241g00015 Stsc-Chr30241 144741 147125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30241g00015 137 708 Su(var)3-9 homologs AT5G04940 35.836 1.60e-107 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc30241g00015 SAD_SRA 6.3e-42 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30241g00015 K11420 - adu:107484449 1073.15