Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30241g00014 ATGTTGGTCTTAAATAGTTCATTATTGTGCTGTTTTGCGGATTCATATACGAAATCAAGAGCATCTTATTACAATACCCCTGATGGCTATGGGAATCCATGGGGAGCTTGTGGCTATGGCGTGTACGGAAGGACCCTCTACGGCGGCAATGTTGCGGCCGTTTCCGGTAGTCTATGGAAAGGTGGAAGTGGTTGCGGCGCATGCTATCAGATTCGGTGTAAAATAGGAGAATATTGTAACGAAGATGGAACACATGTTGTAGTAACAGATTATGGTGAAGGGGACAGAACAGATTTCATAATGAGCGAACATGCATTCTCAAATCTGGCACGTGATTCAGCTTCATCTGCAAAATTGAAGAAATATGGTGTTGTGGACATTGAATACAAGAGGGTCTCTTGTAAATACTCTAAATCCAATGTCCTTGTTAAGCTCCATGAAAACAGCAATAACCCTTATTACTTTGCTATCTTGCTTCTCAATGTTGGTGGAAAATGTGATGTTGCTGCTGTTCACTTGTGGCTGGAAGATAAAAAAGAATGGAGTCCATTGCGAAGGGTGTACGGAACAGTATTTGATTATGAGAACCCGCCAAGTGGTAAAATCAGTTTAAGGTTCCAAATGGATTGCGGTGAAAGGCTTGTTTGGGTGCATCCCAAGAAACCTGTCCCTACTGATTGGAATGCTGGAGATGCTTATGATACTGGCCTTCAGTTCTAA 720 0.4236 MLVLNSSLLCCFADSYTKSRASYYNTPDGYGNPWGACGYGVYGRTLYGGNVAAVSGSLWKGGSGCGACYQIRCKIGEYCNEDGTHVVVTDYGEGDRTDFIMSEHAFSNLARDSASSAKLKKYGVVDIEYKRVSCKYSKSNVLVKLHENSNNPYYFAILLLNVGGKCDVAAVHLWLEDKKEWSPLRRVYGTVFDYENPPSGKISLRFQMDCGERLVWVHPKKPVPTDWNAGDAYDTGLQF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30241g00014 239 Pfam Lytic transglycolase 52 128 IPR009009 -
Stsc30241g00014 239 SUPERFAMILY Barwin-like endoglucanases 6 137 IPR036908 -
Stsc30241g00014 239 SUPERFAMILY PHL pollen allergen 140 234 IPR036749 -
Stsc30241g00014 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 34 139 IPR007112 -
Stsc30241g00014 239 Gene3D - 9 135 IPR036908 -
Stsc30241g00014 239 SMART dpbb_1 51 129 IPR007112 -
Stsc30241g00014 239 Pfam Expansin C-terminal domain 143 215 IPR007117 -
Stsc30241g00014 239 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Stsc30241g00014 239 PRINTS Expansin/Lol pI family signature 33 51 IPR007118 GO:0005576
Stsc30241g00014 239 PRINTS Expansin/Lol pI family signature 181 195 IPR007118 GO:0005576
Stsc30241g00014 239 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Stsc30241g00014 239 PRINTS Expansin/Lol pI family signature 122 138 IPR007118 GO:0005576
Stsc30241g00014 239 PRINTS Expansin/Lol pI family signature 15 30 IPR007118 GO:0005576
Stsc30241g00014 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 153 235 IPR007117 -
Stsc30241g00014 239 PANTHER EXPANSIN-B3 11 239 - -
Stsc30241g00014 239 Gene3D - 136 239 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30241g00014 Stsc-Chr30241 117335 120400 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30241g00014 9 237 Expansin Gene Family AT4G17030 48.035 1.11e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30241g00014 - - ccaj:109800044 294.664