Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30241g00012 ATGGAGCTTAATTTGAAGCGCCAAATAGGGCTTTTTTGTGTGTTATTGATCTTACCTGCACTATGTAGTGCTGCCTTTACAAAATCCAGAGCAACTTATTATAGTACCTCTGATGGTTTAGGGACTCCAACGGGACGATGTGGATATGGCGATTATGGAAGGACCGTAGACGGTGGAAGGGTGGCAGGTGTGTCTAATCTCTGGAGGGATGGAGTTGGCTGTGGTGTGTGTTATCAGGTTAGGTGCACAAACCCATCACTGTGCAGCAGCAACGGAACCTCCTTGGTGGTAACAGACTACGGTGCCGGAGACAGAACTGATTTCGTAATGAGCCCAGCCGCCTTCTCCGGTTTGGGACTCAACTCCACCGCCACCGATCAACTCAAGAAGCTCGGCACCGTTGACATTGAGTACCAGAGAATTCCATGCTCTTACCCGGGCCAAAACATTGTCATCAAAATCAAAGAGAGCAGCACCAACCCCGGTTACTTCTCTATTGTGCTTCTCAACGTGGGTGGAACGTGTGACGTGGATGCTATCCAGGTGTCCCAATCAGGAAGCAACACGTGGATTCCGTTGCGGAGGGTTGATGGTGCGGTTTTTGATATTTCAAATCCGCCAAGTGGGTCCCTCAGTTTGAGGTTTCAAGTTGATTGCGGTTCTGGACTTGTGTGGAAGGTTCCCAAGAATGTTATCCCTGCTAACTGGAGTGCTGGTGCCACTTATGATACCGGCATTCAGTTTTAA 747 0.4913 MELNLKRQIGLFCVLLILPALCSAAFTKSRATYYSTSDGLGTPTGRCGYGDYGRTVDGGRVAGVSNLWRDGVGCGVCYQVRCTNPSLCSSNGTSLVVTDYGAGDRTDFVMSPAAFSGLGLNSTATDQLKKLGTVDIEYQRIPCSYPGQNIVIKIKESSTNPGYFSIVLLNVGGTCDVDAIQVSQSGSNTWIPLRRVDGAVFDISNPPSGSLSLRFQVDCGSGLVWKVPKNVIPANWSAGATYDTGIQF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30241g00012 248 CDD DPBB_EXLB_N 27 143 - -
Stsc30241g00012 248 PANTHER EXPANSIN-B3 18 248 - -
Stsc30241g00012 248 Gene3D - 145 248 IPR036749 -
Stsc30241g00012 248 Pfam Expansin C-terminal domain 151 233 IPR007117 -
Stsc30241g00012 248 SUPERFAMILY Barwin-like endoglucanases 12 147 IPR036908 -
Stsc30241g00012 248 Gene3D - 20 144 IPR036908 -
Stsc30241g00012 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 244 IPR007117 -
Stsc30241g00012 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Stsc30241g00012 248 SUPERFAMILY PHL pollen allergen 149 243 IPR036749 -
Stsc30241g00012 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Stsc30241g00012 248 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Stsc30241g00012 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Stsc30241g00012 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Stsc30241g00012 248 Pfam Lytic transglycolase 61 138 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30241g00012 Stsc-Chr30241 103793 106575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30241g00012 14 246 Expansin Gene Family AT4G17030 50.213 2.77e-79 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30241g00012 - - gmx:100778424 312.383