Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30241g00011 ATGGAGCTTAAGCACTACCAACTTGGTCTTGTTTGTGTTATATTGCTTTTACCAGCACTAAGCAGTGCCGCCACAAATTATAATACCGATTACTGCGCTTGGAATCCTTATAAGAACTCTCGAGCATCCTATTATGATACCCGTGATGGGTATGGCACTTCAAGTGGAGCATGTGGATATGGCGAATATGGATGGACGGTGAATGATGGCAAGGTTGCAGCTGTATCCGGCTTATGGAGAGGTGGAAGTGGCTGTGGTGCATGCTACCAGGTTATATGTAAAGTACCAAGTTTGTGCAAAGCGAATGGAGTAACGGTGGTGGCAACAGATTATGGTCAGGGAGACAGAACAGATTTCATAATGAGCCCACGGGCTTTTCAGGGTTTGGGTGTGAGCCCTGATGCATCTAAAGAACTCAAGAAATATGGTACCCTTGATATTGCATACAAGAGAGTCCCTTGCAACTACTTCCCCAGCAACATTCTTATTAAGGTTCATGAAAGCAGCTCCAACCCTGGATACTTTGCTATGGAGTTTCTCAACGTTGCTGGATCATATGATATCACTGATGTTCAATTGTGGGAGGATTCACGGAAAGAATGGAGCCCATTGCGTAGATCTTATGGGGCAGTGTTTGACTATGCCAACCCACCAAGAGGTCAACTCTTGTTGAGGTTCCAAGTGATTGGTTGTAATGGAACTAAATGGGGGCAACCAAACCCTATCCCTGCTGATTGGAAGCCCAAAATGACTTATGACACTGGACTTCAGCTTAAATAA 780 0.4474 MELKHYQLGLVCVILLLPALSSAATNYNTDYCAWNPYKNSRASYYDTRDGYGTSSGACGYGEYGWTVNDGKVAAVSGLWRGGSGCGACYQVICKVPSLCKANGVTVVATDYGQGDRTDFIMSPRAFQGLGVSPDASKELKKYGTLDIAYKRVPCNYFPSNILIKVHESSSNPGYFAMEFLNVAGSYDITDVQLWEDSRKEWSPLRRSYGAVFDYANPPRGQLLLRFQVIGCNGTKWGQPNPIPADWKPKMTYDTGLQLK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30241g00011 259 Gene3D - 158 258 IPR036749 -
Stsc30241g00011 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 159 IPR007112 -
Stsc30241g00011 259 SUPERFAMILY Barwin-like endoglucanases 31 157 IPR036908 -
Stsc30241g00011 259 Gene3D - 18 155 IPR036908 -
Stsc30241g00011 259 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Stsc30241g00011 259 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Stsc30241g00011 259 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Stsc30241g00011 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Stsc30241g00011 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Stsc30241g00011 259 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Stsc30241g00011 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 254 IPR007117 -
Stsc30241g00011 259 PANTHER EXPANSIN-B3 17 257 - -
Stsc30241g00011 259 Pfam Expansin C-terminal domain 163 242 IPR007117 -
Stsc30241g00011 259 Pfam Lytic transglycolase 76 141 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30241g00011 Stsc-Chr30241 98704 100911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30241g00011 1 258 Expansin Gene Family AT4G17030 46.743 4.55e-75 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30241g00011 - - gmx:100779487 301.212