Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30240g00032 ATGTCATTCCGAAGCATAGTTCGGGATGTGAGGGATAGTATTGGGAGCTTATCTAGGCGCAGTTTCGATGTGAGGCTGACTGGCCATCACAGAGGAAAATCTCATGGATCAGTACAGGATTTGCATGATCAGCCTCTAGTAATTCAAAATAGTCGTTGGGCAAGCTTACCTCCGGAACTACTCTATGATGTCATTCGACGGCTGGAGGAGAGTGAGAACACATGGCCTGCTCGAAAGCATGTTGTTGCATGTTCTGCAGTTTGCCAATCTTGGAGGAGGATGTGCAAAGAAATTGTCAAGAGCCCTGAGTTCTGTGGCAAACTTACATTCCCTGTGTCCTTGAAACAGCCTGGGCCACGAGATGGAATTATGCAATGTTTCATCAAAAGAGATAAATCTAATTCAACATATCACCTATTCCTCTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGAGTGCGTAGAACTGCTTACACAGAGTATGTTATTTCTATGGATGCTGACAACATGTCTAGATCAAGTAACACGTACATTGGAAAGCTGCGATCAAACTTTCTTGGGACAAAATTCATCATATTTGATACACAGCCTCCATATTCCTCTGCACATATATGCCCTTCTGGAGGAACTGGAAGAACGAGCCGCAGATTTTATTCTAAAAAGGTCTCTCCGAAGGTTCCATCTGGAAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTCCTTGGAACTCGAGGCCCAAGGAAGATGCACTGCATCATGCATTCAATACCAGCCTCAGCACTTGACGCCGGCGGCAGTGTTCCTGGCCAGCCAGAGCTTCTCCCTCGTTCCCTGGAGGACTCGTTTCGGAGCATCTCATTTTCCAAGTCTCTAGATCACTCTATAGAGTTCAGCAGCTCACGGTTTTCGGATATTGGTGGATCTGTTAACAATGAGGATGATGAAGGCAAGATGAGACCCTTGGTTCTAAAAAACAAGCCTCCAAGATGGCATGAACAATTACAATGTTGGTGCCTCAATTTCCGAGGAAGGGTAACAGTTGCATCTGTTAAGAACTTTCAGTTGATTGCCGCCACCCAGCCTGCTGCCGGTGCACCCACACCATCTCAACCAACTCCGCCGGATCACGACAAGATTATCCTGCAGTTCGGCAAAGTTGGGAAAGATATGTTCACCATGGATTACCGGTATCCCCTATCTGCCTTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCCTGTGAATAG 1290 0.4558 MSFRSIVRDVRDSIGSLSRRSFDVRLTGHHRGKSHGSVQDLHDQPLVIQNSRWASLPPELLYDVIRRLEESENTWPARKHVVACSAVCQSWRRMCKEIVKSPEFCGKLTFPVSLKQPGPRDGIMQCFIKRDKSNSTYHLFLCLSPALLVENGKFLLSAKRVRRTAYTEYVISMDADNMSRSSNTYIGKLRSNFLGTKFIIFDTQPPYSSAHICPSGGTGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGSVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSSRFSDIGGSVNNEDDEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPTPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30240g00032 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Stsc30240g00032 429 Pfam F-box domain 53 100 IPR001810 GO:0005515
Stsc30240g00032 429 ProSitePatterns Tub family signature 1. 351 364 IPR018066 -
Stsc30240g00032 429 CDD F-box_AtTLP-like 53 97 - -
Stsc30240g00032 429 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Stsc30240g00032 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Stsc30240g00032 429 Gene3D - 48 100 - -
Stsc30240g00032 429 FunFam Tubby-like F-box protein 110 429 - -
Stsc30240g00032 429 Gene3D Tubby Protein; Chain A 112 423 IPR025659 -
Stsc30240g00032 429 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Stsc30240g00032 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Stsc30240g00032 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Stsc30240g00032 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Stsc30240g00032 429 PRINTS Tubby superfamily signature 333 350 IPR000007 -
Stsc30240g00032 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Stsc30240g00032 429 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Stsc30240g00032 429 Pfam Tub family 114 424 IPR000007 -
Stsc30240g00032 429 PANTHER TUBBY-RELATED 30 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30240g00032 Stsc-Chr30240 116028 119964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30240g00032 1 429 TUB Transcription Factor Family AT1G76900 70.130 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc30240g00032 Tub 1.2e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30240g00032 K19600 - gmx:100814578 796.193