Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30240g00020 ATGAAAACTGATCTGTCTTTGCACATAGATGCCAAGCAAGAACAAGAAGAAGCTGGAGAAATAGATGAAGAAGTTGTCATGACGGTGCCATCTCCCATAATATCTTTGCAAGAGAACTACAAAAGTAGCAGAGAGGAGGAGGAGGAGTTGAGTGTGTTACAAATGGAGATGGATCGCATCAAAGAGGAGAATAGAGCTCTGAGGAAAGTGGTGGAACAAACGATGAAAGACTACCATGATCTCCAAAATAAACTTTCCGTGGTTCAAGACAAGAATAATAATAACAAGGATCTTGAAATTTCTCTCCAAAGTGGAGCATCACCGACAATTCCTGATGATGAGATCTTTGATAACAAAACTGATGATGATGAACTGAGTTTGTCACTCAAGTTGAATAATACAAGTAGCACATCATGGAGGATCCATCAACATCAAGAAAAGAACACAGCAGATAATAATACTAATAATAAAGAAGAACTAATTTTAACAAGTTTTGCATCATCATCATTTCACAACAAGTTAATAACAAGAGGAACACATGATGATCATCAATTATCTGCTGCTATCACTACTACTCCTCATCATCATTCTGCAGCAGCCTCAACTCCAAATAGAAAGCCTAGGGTTTCTGTTAGAGCCAGATGCGAAGAAGCCAAAATGAATGATGGATGCCAATGGAGGAAATACGGGCAAAAAATAGCAAAAGGGAATCCATGTCCACGAGCTTATTATCGTTGCACAGTAGCACCAGGTTGCCCAGTTAGGAAACAGGTGCAAAGATGCATGGATGACATGTCAATACTAATAACAACATATGAAGGAACACATAATCATCCACTTCCAGTGGGTGCAACTGCCATGGCCTCAACAGCTTCTTCTTCTGCTAATAATTCTTTTACTCTTTCTACTCCACAACCTCCTCATGATCATCACTTTCCATGGATCATCAACGAAAATAATATTATTAATGGAAGCACACAAGAGCCGCGCATCCCATTATTATTAGGTAATAATAATAATAATAATAATAATGTGTCGGCAATTACTTCAGATCCTAAGTTCAGGGTTGCTGTTGCAGCAGCCATAACCACTCTCTTCACTGATAAGAATAATAATAATAAAGAAAGCTATCATCGTCATCATCATCACGGTGGTAGTGGAGGTACCTCTAACAACAACACCAATAACTGGATCGTAGAATCTCTCTCCAGAAACGTTAAGCCCAATTGA 1230 0.387 MKTDLSLHIDAKQEQEEAGEIDEEVVMTVPSPIISLQENYKSSREEEEELSVLQMEMDRIKEENRALRKVVEQTMKDYHDLQNKLSVVQDKNNNNKDLEISLQSGASPTIPDDEIFDNKTDDDELSLSLKLNNTSSTSWRIHQHQEKNTADNNTNNKEELILTSFASSSFHNKLITRGTHDDHQLSAAITTTPHHHSAAASTPNRKPRVSVRARCEEAKMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCMDDMSILITTYEGTHNHPLPVGATAMASTASSSANNSFTLSTPQPPHDHHFPWIINENNIINGSTQEPRIPLLLGNNNNNNNNVSAITSDPKFRVAVAAAITTLFTDKNNNNKESYHRHHHHGGSGGTSNNNTNNWIVESLSRNVKPN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30240g00020 409 Gene3D WRKY domain 205 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30240g00020 409 MobiDBLite consensus disorder prediction 1 15 - -
Stsc30240g00020 409 FunFam probable WRKY transcription factor 31 205 282 - -
Stsc30240g00020 409 SUPERFAMILY WRKY DNA-binding domain 214 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30240g00020 409 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30240g00020 409 ProSiteProfiles WRKY domain profile. 215 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30240g00020 409 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 376 IPR044810 GO:0003700
Stsc30240g00020 409 MobiDBLite consensus disorder prediction 386 409 - -
Stsc30240g00020 409 MobiDBLite consensus disorder prediction 370 409 - -
Stsc30240g00020 409 Coils Coil 43 91 - -
Stsc30240g00020 409 SMART WRKY_cls 220 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30240g00020 409 Pfam WRKY DNA -binding domain 221 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30240g00020 Stsc-Chr30240 77664 79392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30240g00020 13 294 WRKY Transcription Factor Family AT1G68150 48.227 1.49e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30240g00020 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30240g00020 - - aip:107621791 426.017