Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30240g00019 ATGGAGGTACAGGGGAAGCGCTTGAAGCCACGCCTCGATCGGCGCAACGCCATGAAGAACATCAATTACAAAGAACCCTCTTCCTCCATCGACCTGAACAACCAAACAAGCTTCAGGGTTGACGACGGCGAATTTGACTTCATCTTCCGCACCCTCGGTCTCTCTGGACCCGAAGACTTTTCTATTCCAACTGCAGCATGGGAGCAAGCTCAAAGGTCTCGCCTTTCTCCTTCCCTTGTCACCCCCAAAAACATCATCACCCTCCACGTTGTGGAAGAACATGAACACCAAACTCCAATTCCAGTTATTCCACCTGAAGCTGAATCTGGGTTTAGGCTGAAAAATCTAAGCTTTCAGCAACTTGCTCAGCATAATGTAAAGGGTGGTAATGATTGGGTTAATAAGCAGGTTTTGACTGAGAATTTTAGAGATGGTGGTGGGATCAAGGGTGTGAGGCCTCCACCGGTGATGTTGCGGCCACCACTTGATGATGACAATGATGTTGATGTTGATGTTGTAGATGAAAGAGTTTTCGAAGAGAGTGGGGATCTTGATGCTTCTGATGATGGTGATGATGACAGTGATGTTGCTAGTGGTGAGGTTTCCAACGTTGTTGATGAGTCAAATGTTCATAACGTGTCTCCAAATGGTTCTTTTAGGAGAACGTTTATGTCGTGGCAAAAGGGCGAGATTCTTGGTAAAGGCTCATTTGGAACGGTTTATGAAGGCTTTACCGATGATGGATTCTTTTTTGCGGTGAAGGAGGTATCTTTGTTGGATGAAGGAAGCCAGGGCAAACAGAGCATTTGCCAACTTCAACAGGAAATATCTCTTTTGAGTCAGTTTGAACACGAGAACATAGTTAGATATCTCGGCACAGATAGGGACAATAACATGCTGTACATCTTTTTGGAGCTTGTGACAAAAGGATCATTGGCAAGTCTTTATCGAAAGTATAGTTTGAAGGATTCTCAGGTGTCGGCATACACAAGACAGATTCTAAGTGGTTTGAAGTATCTCCATGATCGTAATGTAGTTCACAGGGACATCAAGTGTGCTAACATATTGGTTGATGCAAATGGATCTGTCAAGCTTGCAGATTTTGGTTTGGCAAAGGCAACTAAACTAAACGATGTTAAATCAAGCAAAGGTTCCCCATATTGGATGGCCCCTGAGGTTGTTAACCTACGAAACCGTGGTTATGGACTAGCAGCTGATATATGGAGCTTGGGATGTACAGTTTTGGAGATGTTAACACGACAACCTCCTTATTCTCATTTAGAAGGAATGCAAGCCCTATTTCGGATAGGGAGAGGTCAAGCACCTCCAGTTCCTGAATCATTATCAAAAGATGCAAGAGATTTCATTATGAAATGCTTACAAGTGAATCCAAGCAAACGGCCAACCGCTGCTCAGCTATTGGATCATCCATTTGTAAAGAGATCACTTCTATCCCCCATAAGTCTTGTCTCTCCACGCATTAATCTTCTTCTCTCTTAA 1500 0.4373 MEVQGKRLKPRLDRRNAMKNINYKEPSSSIDLNNQTSFRVDDGEFDFIFRTLGLSGPEDFSIPTAAWEQAQRSRLSPSLVTPKNIITLHVVEEHEHQTPIPVIPPEAESGFRLKNLSFQQLAQHNVKGGNDWVNKQVLTENFRDGGGIKGVRPPPVMLRPPLDDDNDVDVDVVDERVFEESGDLDASDDGDDDSDVASGEVSNVVDESNVHNVSPNGSFRRTFMSWQKGEILGKGSFGTVYEGFTDDGFFFAVKEVSLLDEGSQGKQSICQLQQEISLLSQFEHENIVRYLGTDRDNNMLYIFLELVTKGSLASLYRKYSLKDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQALFRIGRGQAPPVPESLSKDARDFIMKCLQVNPSKRPTAAQLLDHPFVKRSLLSPISLVSPRINLLLS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30240g00019 499 Pfam Protein kinase domain 227 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30240g00019 499 PRINTS Tyrosine kinase catalytic domain signature 448 470 IPR001245 GO:0004672|GO:0006468
Stsc30240g00019 499 PRINTS Tyrosine kinase catalytic domain signature 304 317 IPR001245 GO:0004672|GO:0006468
Stsc30240g00019 499 PRINTS Tyrosine kinase catalytic domain signature 339 357 IPR001245 GO:0004672|GO:0006468
Stsc30240g00019 499 PRINTS Tyrosine kinase catalytic domain signature 405 427 IPR001245 GO:0004672|GO:0006468
Stsc30240g00019 499 SMART serkin_6 226 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30240g00019 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Stsc30240g00019 499 MobiDBLite consensus disorder prediction 143 202 - -
Stsc30240g00019 499 FunFam Mitogen-activated protein kinase 1, putative, expressed 224 492 - -
Stsc30240g00019 499 SUPERFAMILY Protein kinase-like (PK-like) 219 492 IPR011009 -
Stsc30240g00019 499 Gene3D Transferase(Phosphotransferase) domain 1 224 491 - -
Stsc30240g00019 499 MobiDBLite consensus disorder prediction 181 196 - -
Stsc30240g00019 499 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 184 483 - -
Stsc30240g00019 499 ProSiteProfiles Protein kinase domain profile. 226 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30240g00019 499 ProSitePatterns Protein kinases ATP-binding region signature. 232 254 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30240g00019 Stsc-Chr30240 73681 76032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30240g00019 11 483 MAP Kinase Kinase Kinase AT4G08500 44.056 1.75e-139 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc30240g00019 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30240g00019 K13414 - var:108347588 568.155