Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30240g00005 ATGTCCTTGACAGGGCGTCCTCGAGTGATCGTGAATGGAGTCCGAAGAACAAGAACTTTCCACTGCTTCTGGTGCTTTAACTGCCAACGCACAGTGAGAATACCTGCTGCATATCCAAACGGTTCCTTGTGCCCTTACTGCTTCAATAGACTCCGTTATGAGCTTGACATAACAAGGCCAACAAGGTTTCTCTTCAACAACAACAACAACTTCAATAATTTGGAACCTTCACCAGCTTCTCAGTTATTGAACGGCCTCGCTCTCATTCTCGATCCATCTCAACGCAATCGTAACCGTTATAATAATCTTCGTCATCGCTGGGAAGAAGAACAAGAAAATCAAAATGATCCACGGGCTTGGATTACTCTCAGATTCGTGAGGCCTTACGGTCCACGGAGGCTTATGCCTCCGCCTCCGCCGCAACCGCCTCAAGGCAACGATAACAGCGATCCAACGATTGATGAATTCATTCAAAATCTAGTCGAGAATAATAGCAACCGGCCGGGGCCGCCTCCGGCTTCGTCTTCGGCGATCGCAGCGTTGCCGGTTGTGAGGCTGGCGCGAGAACAATTGGCGAGTGATCCGAACTGTGCAATATGCAAAGATGAATTTGAGGTAGATGGAGAAGTGAGGGAGTTGCCGTGCAAGCATTTCTACCATTGTGATTGCATTCTGCCATGGCTGCGCATCCATAATACTTGCCCTGTTTGCCGCTACGAGCTTCCTGTTGCTGCGGCGAGCCACCAGAATTATCAGAATAATAATAATAATAATAATAATGAGCAGCAGGGGTTTGTTGGCTTCAACTGGATTTTGAGACATCTTGCTTCAATCAACCCTATTCGTGCTGTCTTGGATTATTTGACTCACAGATATGACTCTCATCATCACCAACAAGATAACAATGGTGGAGGTATTATTAGCTCTTGGTGGAGAGAATTGTTCATCTTATAG 954 0.4654 MSLTGRPRVIVNGVRRTRTFHCFWCFNCQRTVRIPAAYPNGSLCPYCFNRLRYELDITRPTRFLFNNNNNFNNLEPSPASQLLNGLALILDPSQRNRNRYNNLRHRWEEEQENQNDPRAWITLRFVRPYGPRRLMPPPPPQPPQGNDNSDPTIDEFIQNLVENNSNRPGPPPASSSAIAALPVVRLAREQLASDPNCAICKDEFEVDGEVRELPCKHFYHCDCILPWLRIHNTCPVCRYELPVAAASHQNYQNNNNNNNNEQQGFVGFNWILRHLASINPIRAVLDYLTHRYDSHHHQQDNNGGGIISSWWRELFIL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30240g00005 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 242 - -
Stsc30240g00005 317 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
Stsc30240g00005 317 SUPERFAMILY RING/U-box 178 244 - -
Stsc30240g00005 317 Pfam Ring finger domain 196 238 IPR001841 -
Stsc30240g00005 317 SMART ring_2 197 237 IPR001841 -
Stsc30240g00005 317 MobiDBLite consensus disorder prediction 131 146 - -
Stsc30240g00005 317 CDD RING-H2_RNF126-like 196 238 - -
Stsc30240g00005 317 MobiDBLite consensus disorder prediction 131 152 - -
Stsc30240g00005 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 244 IPR013083 -
Stsc30240g00005 317 FunFam E3 ubiquitin-protein ligase RING1-like 159 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30240g00005 Stsc-Chr30240 13181 14268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30240g00005 1 293 C3H Transcription Factor Family AT1G68180 32.542 3.15e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30240g00005 K11982 - gmx:100793656 290.041