Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30239g00022 ATGGTGGTCCGGGGAGCACCTGCTATTGCCATTGCAGCGGCACTCTCACTGGCTGTTGAGGTCTCTAATTTAGGTTCTTTCAATGGGTCACCTGATGATGCCGCTTCCTTGCTGCAAAGCAAGTTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTAAACTTATCAGATGCTGCAACAAAGCTAAAACAAGTCATATCTAAGGCTGCTGGTACCAGTTCAGATGCCAGGAGTGTTTTCCAGGCATATATAGAAGCAGCCGAAATTATGCTTGAGGATGATGTTGCCTCGAACAAAGCAATTGGCTCATATGGAGCAAAGTTCATGCAACAGCAAACGGAGAAACAGAAACTTTCTGTCTTGACCCATTGCAACACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTAATTCGTGCACTTCACAGTGGAGGAGTTTTAGAAAGGGCTTATTGCACTGAAACCCGGCCATTTAATCAAGGATCTAGACTTACTGCCTATGAGTTAGTGCATGATAAAATACCAGCTACTCTTATAGCAGATTCTGCTGCTGCCGCCTTAATGAAAGCGAGACGCGTGGATGCTGTTGTTGTTGGGGCAGACCGTGTCGCATCAAATGGTGACACAGCCAACAAAATCGGGACCTATAGCGTTGCCTTATGCGCCAAGTTTCATAACGTACCTTTTTATGTGGCCGCACCGGTGACTTCAATCGATCTGTCACTTTCTTCCGGAGAAGAAATTGTCATTGAGGAGAGATCTCCGAAGGAGTTGTTGAACACGCGAGGAGGGCTTGGAGAGCAAGTTGCTGCCTCAGGAATTTCAGTATGGAATCCGGCTTTCGATGTTACACCTGCTAGTCTAATACATGGAATCATAACTGAGAAGGGTGTAATTACAAAGACGTCTTCGGGTGATGCTTTTGACATAAAAGCATTCATAGAGAAAACAGGTTAG 966 0.4586 MVVRGAPAIAIAAALSLAVEVSNLGSFNGSPDDAASLLQSKLEYLVSSRPTAVNLSDAATKLKQVISKAAGTSSDARSVFQAYIEAAEIMLEDDVASNKAIGSYGAKFMQQQTEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLERAYCTETRPFNQGSRLTAYELVHDKIPATLIADSAAAALMKARRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPVTSIDLSLSSGEEIVIEERSPKELLNTRGGLGEQVAASGISVWNPAFDVTPASLIHGIITEKGVITKTSSGDAFDIKAFIEKTG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30239g00022 321 FunFam Methylthioribose-1-phosphate isomerase 1 150 - -
Stsc30239g00022 321 Gene3D - 96 302 IPR042529 -
Stsc30239g00022 321 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 1 304 IPR005251 -
Stsc30239g00022 321 SUPERFAMILY NagB/RpiA/CoA transferase-like 1 306 IPR037171 -
Stsc30239g00022 321 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 1 318 - -
Stsc30239g00022 321 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 1 313 IPR005251 -
Stsc30239g00022 321 FunFam Methylthioribose-1-phosphate isomerase 116 314 - -
Stsc30239g00022 321 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 1 304 IPR011559 GO:0044249
Stsc30239g00022 321 Gene3D - 1 95 IPR027363 -
Stsc30239g00022 321 Pfam Initiation factor 2 subunit family 3 303 IPR000649 GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30239g00022 Stsc-Chr30239 137563 140748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30239g00022 1 319 Eukaryotic Initiation Factors Gene Family AT2G05830 76.875 1.79e-171 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30239g00022 K08963 - gmx:100799311 509.22