Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30239g00021 ATGGCGTCTGCTTCTTCCAACGGGCTTGAATCCCCCAACACTCTCCAATCCATATGTTACAACCGTGGTTCCCTTCAGCTTCTCGATCAGAGGAAGCTACCTCTGGAAACAACTTTTTTGGAAATAAAGGATTCTACTGATGGCTGGAATGCCATACGGGATATGGTGGTCCGGGGAGCACCTGCTATTGCCATTGCAGCGGCACTCTCACTGGCTGTTGAGGTCTCTAATTTAGGTTCTTTCAATGGGTCACCTGATGATGCCGCTTCCTTGCTGCAAAGCAAGTTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTAAACTTATCAGATGCTGCAACAAAGCTAAAACAAGTCATATCTAAGGCTGCTGGTACCAGTTCAGATGCCAGGAGTGTTTTCCAGGCATATATAGAAGCAGCCGAAATTATGCTTGAGGATGATGTTGCCTCGAACAAAGCAATTGGCTCATATGGAGCAAAGTTCATGCAACAGCAAACGGAGAAACAGAAACTTTCTGTCTTGACCCATTGCAACACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTAATTCGTGCACTTCACAGTGGAGGAGTTTTAGAAAGGGCTTATTGCACTGAAACCCGGCCATTTAATCAAGGATCTAGACTTACTGCCTATGAGTTAGTGCATGATAAAATACCAGCTACTCTTATAGCAGATTCTGCTGCTGCCGCCTTAATGAAAGCGAGACGCGTGGATGCTGTTGTTGTTGGGGCAGACCGTGTCGCATCAAATGGTGACACAGCCAACAAAATCGGGACCTATAGCGTTGCCTTATGCGCCAAGTTTCATAACGTACCTTTTTATGTGGCCGCACCGGTGACTTCAATCGATCTGTCACTTTCTTCCGGAGAAGAAATTGTCATTGAGGAGAGATCTCCGAAGGAGTTGTTGAACACGCGAGGAGGGCTTGGAGAGCAAGTTGCTGCCTCAGGAATTTCAGTATGGAATCCGGCTTTCGATGTTACACCTGCTAGTCTAATACATGGAATCATAACTGAGAAGGGTGTAATTACAAAGACGTCTTCGGGTGATGCTTTTGACATAAAAGCATTCATAGAGAAAACAGGTTAG 1128 0.4601 MASASSNGLESPNTLQSICYNRGSLQLLDQRKLPLETTFLEIKDSTDGWNAIRDMVVRGAPAIAIAAALSLAVEVSNLGSFNGSPDDAASLLQSKLEYLVSSRPTAVNLSDAATKLKQVISKAAGTSSDARSVFQAYIEAAEIMLEDDVASNKAIGSYGAKFMQQQTEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLERAYCTETRPFNQGSRLTAYELVHDKIPATLIADSAAAALMKARRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPVTSIDLSLSSGEEIVIEERSPKELLNTRGGLGEQVAASGISVWNPAFDVTPASLIHGIITEKGVITKTSSGDAFDIKAFIEKTG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30239g00021 375 SUPERFAMILY NagB/RpiA/CoA transferase-like 13 360 IPR037171 -
Stsc30239g00021 375 Pfam Initiation factor 2 subunit family 57 357 IPR000649 GO:0044237
Stsc30239g00021 375 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 16 358 IPR005251 -
Stsc30239g00021 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
Stsc30239g00021 375 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 43 358 IPR011559 GO:0044249
Stsc30239g00021 375 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 15 367 IPR005251 -
Stsc30239g00021 375 Gene3D - 205 370 IPR042529 -
Stsc30239g00021 375 FunFam Methylthioribose-1-phosphate isomerase 13 204 - -
Stsc30239g00021 375 Gene3D - 13 204 IPR027363 -
Stsc30239g00021 375 FunFam Methylthioribose-1-phosphate isomerase 170 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30239g00021 Stsc-Chr30239 137515 141888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30239g00021 54 373 Eukaryotic Initiation Factors Gene Family AT2G05830 76.636 1.35e-170 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30239g00021 K08963 - gmx:100799311 582.408