LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30238g00035	ATGGATCTGGAAAACGATCAGATTAGTAACGAGATCAAGAACAGTCCTAATGCCGCGAGTGCGAGGACTGTAATCTTCGATAAGTACGAGATGGGACGCGTTTTAGGGCAGGGCAACTTTGCCAAGGTGTACTACGGGCGGAACCTAGCGACGAACGAGAGCGTGGCGATTAAAGTGATAAAGAAGGAGAAGCTGAAGAAGGAGAGGCTGGTGAAGCAGATAAAGAGAGAGGTTTCGGTTATGAGGCTGGTGAGGCATCCGAACATCGTGGAGTTGAAGGAAGTTATGGCGACCAAGGGGAAGATATTCTTGGTTATGGAGTACGTTAAGGGAGGGGAGTTGTTCAAGAAAGTTGAGAAAGGGAAGCTCAAGGAAGAGGTTGCTAGAAAGTATTTTCAGCAGCTGATCTCCGCCGTTGATTTCTGCCATAGCCGCGGCGTAACTCACAGAGATCTCAAACCAGAAAATCTGCTTCTTGACGAGAATGAAGAGCTTAAGGTCTCCGATTTCGGACTCTCTGCTTTGCCGGAACAACGCCGTGCAGATGGCATGCTTATAACACCGTGTGGAACACCTGCATATGTGGCACCAGAAGTGTTGAAGAAGAAAGGGTATGATGGATCCAAAGCAGATATATGGTCCTGTGGTGTGATTCTTTATGCTCTGGTTTGTGGCTATCTACCCTTCCAAGGTGAAAACGTGATGAGAATTTACAGAAAAGCCTTCAAGGCTCAATATGAATTCCCTGATTGGGTTTCTGAAGGAGCAAAGAACTTGATCTCAAACCTCCTTGTTGCTGATCCTGAGAAGAGGTTCTCAATTGCTGATATCATGAAGGATTCTTGGTTCCAAGTCGGGTTCATGCGCCCGATCGCATTCTCCTTTAAGGAGTCCGCGATTGGGGCCAATGTGGATGATTTCGATGAGGATGATGATGATGATAGCAGCAATGATAATCAAGAGTTTAACAAGGATAATAATTTGAAGCAGAGTAGTACTAGCTCTAAGCCTGCGCGGCCGTTTTACAATGCTTTTGAGATAATTTCGTCGCTGTCGCATGGTTTTGATCTGAGGAGTTTGTTTGAGACAAGGAAGAGATCGCCGTCGGTGTTTATATCGAAGCTTTCGGCTCAAGCAGTGGTGGGGAAGCTAGAGGCTATGGCGACGAAGCTGAATTTTAGAGTGGCGGGGAAGAAGAAGAAGGAGTTTGTTGTGAGGATGGAAGGGGAGAGGGAAGGGAGGAAAGGGAGGCTGGCAATGACGGTTGAAGTGTTCGAGGTGGCGCCGGAGGTGGCGGTGGTGGAGTTCTCGAAGTCGGCCGGAGACACCTTGGAGTATGTCAAATTCTGTGAGGAGGAAGTTAGACCTTCATTGAATGACATTGTTTGGAGTTGGCAGGGTGATGATAACAACAACAACTAA	1422	0.4733	MDLENDQISNEIKNSPNAASARTVIFDKYEMGRVLGQGNFAKVYYGRNLATNESVAIKVIKKEKLKKERLVKQIKREVSVMRLVRHPNIVELKEVMATKGKIFLVMEYVKGGELFKKVEKGKLKEEVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEELKVSDFGLSALPEQRRADGMLITPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALVCGYLPFQGENVMRIYRKAFKAQYEFPDWVSEGAKNLISNLLVADPEKRFSIADIMKDSWFQVGFMRPIAFSFKESAIGANVDDFDEDDDDDSSNDNQEFNKDNNLKQSSTSSKPARPFYNAFEIISSLSHGFDLRSLFETRKRSPSVFISKLSAQAVVGKLEAMATKLNFRVAGKKKKEFVVRMEGEREGRKGRLAMTVEVFEVAPEVAVVEFSKSAGDTLEYVKFCEEEVRPSLNDIVWSWQGDDNNNN	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30238g00035	473	Gene3D	Transferase(Phosphotransferase) domain 1	21	344	-	-
	Stsc30238g00035	473	Gene3D	Kinase associated domain 1, KA1	345	464	-	-
	Stsc30238g00035	473	FunFam	Non-specific serine/threonine protein kinase	338	463	-	-
	Stsc30238g00035	473	ProSiteProfiles	Protein kinase domain profile.	29	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30238g00035	473	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	147	159	IPR008271	GO:0004672\|GO:0006468
	Stsc30238g00035	473	FunFam	Non-specific serine/threonine protein kinase	22	327	-	-
	Stsc30238g00035	473	ProSiteProfiles	NAF domain profile.	337	362	IPR018451	GO:0007165
	Stsc30238g00035	473	MobiDBLite	consensus disorder prediction	321	336	-	-
	Stsc30238g00035	473	SMART	serkin_6	29	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30238g00035	473	Coils	Coil	57	77	-	-
	Stsc30238g00035	473	SUPERFAMILY	Protein kinase-like (PK-like)	25	284	IPR011009	-
	Stsc30238g00035	473	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	21	458	-	-
	Stsc30238g00035	473	MobiDBLite	consensus disorder prediction	306	336	-	-
	Stsc30238g00035	473	FunFam	Non-specific serine/threonine protein kinase	20	108	-	-
	Stsc30238g00035	473	ProSitePatterns	Protein kinases ATP-binding region signature.	35	62	IPR017441	GO:0005524
	Stsc30238g00035	473	Pfam	Protein kinase domain	29	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30238g00035	473	CDD	CIPK_C	343	459	-	-
	Stsc30238g00035	473	Pfam	NAF domain	341	395	IPR004041	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30238g00035	Stsc-Chr30238	182709	185243	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30238g00035	22	473	CBL-interacting serine-threonine protein kinases	AT5G10930	61.454	0.0	562

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Stsc30238g00035		Pkinase	1.9e-77	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30238g00035	-		-	lja:Lj3g3v2118210.1	655.595