Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30238g00031 ATGTCAGGTGACGAAGCCCCAGCTGTGGTACCTGAGGCAGCAGCAGCTCCTGCCATTGGTGAGCCAATGGATATCATGACTGCCTTGCAGCTTGTGCTCAGGAAGTCACTTGCTTATGGTGGCCTTGCTCGTGGCCTTCACGAGGGTGCCAAGGTTATTGAGAAGCGCACCGCACAGCTTGTTGTTCTTGCAGAGGACTGCGACCAACCCGACTATGTTAAACTTGTCAAGGCCCTTTGTGCTGAGCACAGTGTTAGCCTTCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAGTGGGCTGGTCTTTGCAAGATCGACTCAGAAGGAAAAGCTAGGAAGGTGACTGGTTGCTCCTGCGTTGTTGTTAAGGACTTTGGTGAGGAACATGAAGCCTATAATGTTGTCCTTCAGCATGTGAAAGCTCAATGA 429 0.5128 MSGDEAPAVVPEAAAAPAIGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALCAEHSVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30238g00031 142 FunFam 40S ribosomal protein S12 9 142 - -
Stsc30238g00031 142 PRINTS Ribosomal protein S12E family signature 32 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc30238g00031 142 PRINTS Ribosomal protein S12E family signature 87 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc30238g00031 142 PRINTS Ribosomal protein S12E family signature 46 62 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc30238g00031 142 PRINTS Ribosomal protein S12E family signature 112 125 IPR000530 GO:0003735|GO:0005840|GO:0006412
Stsc30238g00031 142 PANTHER 40S RIBOSOMAL PROTEIN S12 16 141 - -
Stsc30238g00031 142 SUPERFAMILY L30e-like 22 140 IPR029064 -
Stsc30238g00031 142 Gene3D - 10 142 IPR029064 -
Stsc30238g00031 142 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 28 121 IPR004038 -
Stsc30238g00031 142 ProSitePatterns Ribosomal protein S12e signature. 28 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30238g00031 Stsc-Chr30238 139667 141355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30238g00031 19 142 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 76.613 5.72e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30238g00031 K02951 - gmx:100786733 244.588