Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30238g00027 ATGGAGAATAATAATAATGAGGAAATCCCATCAGCACCATCAACACCAGCCACACCAGGGACTCCAGGTGCACCTCTCTTCGGAGGCTTCAGATCCACCAACAATGGCGGTGGTCTCAGTAGAAAGTCACTCCTCAAGAATTGCAAGTGTTTCAGCGTTGAAGAATGGACCATTGAAGACGGTGCCTTACCCAAAGTCTCTTGCTCTTTGCCACCTCCTCCTGTTCCTCTTGCCAGAAAGGTGGGAGCTGAGTTCATCGGAACGTTCATTCTAATGTTCGCCGGAACGGCGGCGGCCATAGTAAACGAAAAGACAAATGGATCGGAGACTCTGATTGGTTGCGCCGCCGTGACCGGCCTTGCTGTTATGGTGATCATCCTCTCCACCGGCCACATATCCGGTGCTCATCTCAACCCTGCCGTTACCATTTCCTTTGCCGCTTTGAAGCACTTCCCATGGAAGAACGTGCCAATGTATATAGGAGCACAAATATTGGCATCAGTGTGTGCGGCATTTGCACTGAAGGGAGTGTATCATCCATTTATGGGGGGTGGAGTGACAGTTCCTTCTTCTGGAGAATATGGACAAGCTTTTGCTTTAGAATTCATCATCTCCTTCAATCTCATGTTTGTTGTCACTGCTGTCGCCACCGACACCAGAGCTGTTGGAGAGTTAGCGGGAATCGCGGTGGGAGCCACTGTCATGCTCAACATCCTCATAGCCGGGCCAGCATCAGGGGGATCAATGAACCCAGTAAGAACATTGGGTCCAGCAATTGCAGCAAACAATTACAAAGCAATTTGGGTTTATTTGACAGCTCCAATTCTTGGTGCACTTGCCGGTGCTGGTGCTTATTCTGCCGTTAAACTTCCTGATGAAGATGAAAAACCTGAACTCAAGGCTCCTTCAAATCCTGGAAGCTTTAGAAGGTGA 933 0.4909 MENNNNEEIPSAPSTPATPGTPGAPLFGGFRSTNNGGGLSRKSLLKNCKCFSVEEWTIEDGALPKVSCSLPPPPVPLARKVGAEFIGTFILMFAGTAAAIVNEKTNGSETLIGCAAVTGLAVMVIILSTGHISGAHLNPAVTISFAALKHFPWKNVPMYIGAQILASVCAAFALKGVYHPFMGGGVTVPSSGEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPASGGSMNPVRTLGPAIAANNYKAIWVYLTAPILGALAGAGAYSAVKLPDEDEKPELKAPSNPGSFRR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30238g00027 310 Pfam Major intrinsic protein 77 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30238g00027 310 Gene3D Glycerol uptake facilitator protein. 74 299 IPR023271 -
Stsc30238g00027 310 CDD MIP 79 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30238g00027 310 ProSitePatterns MIP family signature. 136 144 IPR022357 -
Stsc30238g00027 310 MobiDBLite consensus disorder prediction 1 29 - -
Stsc30238g00027 310 PRINTS Major intrinsic protein family signature 268 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30238g00027 310 PRINTS Major intrinsic protein family signature 79 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30238g00027 310 PRINTS Major intrinsic protein family signature 200 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30238g00027 310 PRINTS Major intrinsic protein family signature 118 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30238g00027 310 PRINTS Major intrinsic protein family signature 231 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30238g00027 310 PRINTS Major intrinsic protein family signature 155 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30238g00027 310 PANTHER AQUAPORIN NIP2-1 45 293 IPR034294 -
Stsc30238g00027 310 SUPERFAMILY Aquaporin-like 76 296 IPR023271 -
Stsc30238g00027 310 FunFam Aquaporin NIP2-1 67 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30238g00027 Stsc-Chr30238 116413 121186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30238g00027 5 310 Major Intrinsic Protein MIP AT1G80760 76.774 6.43e-166 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30238g00027 K09874 - qsu:112009900 449.899