Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30238g00025 ATGGACCTTCAAACCTTAGAAGATTTGAACATGGTCACATTTTCAGATACACAAAAACCTTCCATGCATGAAAATAAGGAAGATCAAGAACTAGATTCAGATACTACTATTCTTCAACTTGATCTAAGTCTTTCAAGCAATGATGATTCTTCAAAAACAAAGAATAAGCAAGAATTGAACTTGCTCAACTTTCTTGGTCCAAATTCACCTGAAAACTCATCAGATTCAACCCATAGCAAGAACAAGAACAATGAAACAATGGAGCACAGAACATTCTCATGCAACTATTGCCAGAGAAAGTTCTACAGTTCTCAAGCACTTGGTGGCCATCAAAATGCACACAAACGTGAAAGAACATTAGCAAGAAGAGGACATCATCATCACCATCACCACAAATCTCCATTGTTATTATCATCAATGGTAGATTTTGGATACAGATTCTCTTCTTCTAATTCTGCTGCTTCTTCTTCTTCAAATGGATCCTATAACAAGCCTCTTGGGATTCAGGCTCATTCTATGATCAATAAACCTTCTTATCATCATCAGCCACCCTTTTTCGCGGCCTCGTGTCGCGAAAATGGGTGGCAGAGGCAGCATTGTTTGGATTCACAGCCTGCAATTGGGAAGCTGAGTAATCACAATGGTATGGAATCTGAATCATCATCATCCATGGCTGCTATCGGCGGCGGCGGCGTGGCGAGGTTAGAGAAGTTTCTTCCTACAAGGCTTGTGACACAAGGTTTTGGAGGGTATTGGTTTGGTAGTTCTTCTCATAATTTGAATTCTTCTAAACATGACAATAATAATAAGTTGCAGAAGCTTGATTTGTCACTCAAGCTCTAA 843 0.395 MDLQTLEDLNMVTFSDTQKPSMHENKEDQELDSDTTILQLDLSLSSNDDSSKTKNKQELNLLNFLGPNSPENSSDSTHSKNKNNETMEHRTFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGHHHHHHHKSPLLLSSMVDFGYRFSSSNSAASSSSNGSYNKPLGIQAHSMINKPSYHHQPPFFAASCRENGWQRQHCLDSQPAIGKLSNHNGMESESSSSMAAIGGGGVARLEKFLPTRLVTQGFGGYWFGSSSHNLNSSKHDNNNKLQKLDLSLKL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30238g00025 280 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Stsc30238g00025 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Stsc30238g00025 280 MobiDBLite consensus disorder prediction 63 84 - -
Stsc30238g00025 280 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 280 IPR044246 GO:0009788
Stsc30238g00025 280 MobiDBLite consensus disorder prediction 63 80 - -
Stsc30238g00025 280 SUPERFAMILY beta-beta-alpha zinc fingers 89 120 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30238g00025 Stsc-Chr30238 102035 102877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30238g00025 5 280 C2H2 Transcription Factor Family AT5G10970 37.193 1.27e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30238g00025 - - adu:107463735 309.686