Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30238g00018 ATGGCTAGACCACAACAACGCTATAGAGGTGTTCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTGAAGACAAGAATATGGCTAGGAACATTTGAAACAGCTGAAGATGCAGCAAGAGCATATGATGAAGCAGCTAGGTTAATGTGTGGACCAAAAGCAAGAACCAATTTCCCATATAACCCTAATTTGTCACAATCATCATCCTCATCATCTTCTTCTTCTAAGCTACTATCTCCTACTTTGACTGCAAAATTACACAAATGCCACTTGGCTTCCCTTTCCCTTCAAATGTCCAATAATAAGCAAAAATCATCACAACACATCAAAGATCCTCAACCACCACCACCATCATCATCATCATCAAATAGGCTCAATAATAATCAATTCCCATTTGGTAATGCCATTGCTTATGAGGAGTTACACTGGCTAGAAGGGAATAATAATATTAATAATAATAATAATAATTGGGGTGGCATTATTGAAGGTCAAGTTGAGGTTGCACAACAACAATTTCAGCCAGTTCTTGAAGATGATCACATTGAGCAAATGATACAAGAGCTGCTTGATGGTGGATCAATTGAACTTTGCTCAATTGGGTCAAATTAA 624 0.3878 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNLSQSSSSSSSSSKLLSPTLTAKLHKCHLASLSLQMSNNKQKSSQHIKDPQPPPPSSSSSNRLNNNQFPFGNAIAYEELHWLEGNNNINNNNNNWGGIIEGQVEVAQQQFQPVLEDDHIEQMIQELLDGGSIELCSIGSN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30238g00018 207 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Stsc30238g00018 207 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Stsc30238g00018 207 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Stsc30238g00018 207 MobiDBLite consensus disorder prediction 105 131 - -
Stsc30238g00018 207 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Stsc30238g00018 207 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Stsc30238g00018 207 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Stsc30238g00018 207 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Stsc30238g00018 207 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Stsc30238g00018 207 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Stsc30238g00018 207 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30238g00018 Stsc-Chr30238 62881 64278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30238g00018 1 204 AP2-EREBP Transcription Factor Family AT5G25190 57.561 1.99e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc30238g00018 AP2 9.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30238g00018 - - adu:107463739 317.005