Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30238g00016 ATGGTGAAGTTCTTGAAGCCCAATAAGGCGGTTATCGTTCTTCAAGGCCGTTACGCCGGTCGGAAAGCCGTCATCATCCGCGCCTTCGACGACGGAACGCGCGACCGTCCCTACGGTCACTGCCTGGTCGCCGGGATCAAGAAGTACCCTTCCAAGGTGGTGAAGAGAGACTCCGCCAAGAAGACGGCGAAGAAGTCGCGCGTGAAGGCGTTCGTTAAGATGGTTAACTACCAGCACGTGATGCCGACGCGCTACACGCTCGACGTGGATTTGAAGGATGCCGTTTCCGTTGAGTCGCTTCAGTCGAAGGACAAGAAGGTTGCAGCGCTTAAAGAGACCAAGAAGAGGCTCGAGGAGAGGTTCAAGACCGGTAAAAACCGTTGGTTCTTCACCAAGCTTAGGTTCTGA 408 0.549 MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRPYGHCLVAGIKKYPSKVVKRDSAKKTAKKSRVKAFVKMVNYQHVMPTRYTLDVDLKDAVSVESLQSKDKKVAALKETKKRLEERFKTGKNRWFFTKLRF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30238g00016 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Stsc30238g00016 135 SUPERFAMILY Translation proteins SH3-like domain 2 135 IPR008991 -
Stsc30238g00016 135 FunFam 60S ribosomal protein L27 1 135 - -
Stsc30238g00016 135 Coils Coil 100 127 - -
Stsc30238g00016 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Stsc30238g00016 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Stsc30238g00016 135 Gene3D - 1 135 IPR038655 -
Stsc30238g00016 135 CDD KOW_RPL27 6 88 IPR041991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30238g00016 Stsc-Chr30238 54478 54885 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30238g00016 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 80.000 1.18e-80 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30238g00016 K02901 - jre:108985511 251.521