Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30238g00014 ATGGAAGCTGCTGCAATTATGGCAATTGCATTGGCCAATGGAGGGGGGAAACCACCAGATTGGCCAGATTTTCTAGGAATAATAGTGCTGCTTGTTATCAACTCTACCATTAGCTTTTTAGAAGAAAATAATGCAGGTAATGCTGCTGCAGCACTAATGGCAGGTCTTGCTCCAAAAGCCAAGGTTTTAAGAGATGGAAAATGGAAAGAGGAAGAAGCTTCTGTATTAGTGCCAGGAGATATCGTAAGCATAAAATTAGGAGACATAATTCCGGCAGATGCGCGTCTCTTAGAAGGGGATCCACTCAAGATTGATCAATCAGCACTCACTGGTGAATCATTGCCTGTAACTAAGAATCCAGGTTCTGAAGTCTACTCCGGATCCACAGTTAAACAAGGAGAGATTGAAGCTATTGTCATCGCCACCGGAGTCCACACCTTCCTTGGTAAGGCTGCTCATTTGGTAGACAACACTAACCAAGTTGGCCACTTCCAAAAGGTGTTGACATCTATTGGTAACTTCTGCATTTTTTCAATTGGTTTGGGAATGCTGGTAGAGATTATCGTTATGTATCCAATTCAACATAGGCCTTATAGGAGTGGAATTGACAATCTCTTGGTGCTTCTCATTGGTGGAATTCCCATTGCCATGCCAACAGTGCTCTCCGTTACAATGGCTATTGGTTCTCATAGGTTGTCTGAACAAGGTGCCATCACTAAGAGGATGACAGCCATTGAGGAGATGGCTGGAATGGATGTTCTTTGCAGTGACAAGACTGGCACCCTCACTCTCAACAAGCTCACTGTTGACAAATCTTTGATAGAGACTTTTGCAAAAGATGTGGACAAAGACACTGTACTTTTGCTTGGAGCTAGAGCATCAAGAGTAGAGAACCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTAGGAGATCCTAAAGAGGCTAGAGATGGCATTACAGAGGTGCATTTCTTGCCCTTCAATCCGGTGGACAAGCGTACGGCCATAACATACATTGATGCTGACGGTAGTTGGCACCGAGTAAGCAAAGGTGCTCCGGAGCAGATCATAGCTCTTTGCAATCTAAAGGGAGAAGTGATGAAGAAAGCTCATTTCATTATTGATGGTTTTGCTGATAGAGGCCTCCGATCACTTGCTATTGCTAGACAAGAAGTGCCAGAGAAGACCAAAGAGAGTCCAGGAGGTCCATGGCAATTTGTAGGCCTCTTGCCTCTCTTTGATCCGCCAAGGCACGACAGTGCGGATACCATCCGCACGGCTCTTGAACTCGGAGTCAATGTCAAGATGATCACAGGTGATCAGCTAGCTATTGGCAAGGAGACCGCTCGCAGACTCGGCATGGGAAGTAACATGTATCCTTCTTCCTCCCTCCTTGGCAATGACAAGGATAATACCGTTGGTGGAATTCCGGTTGATGATCTTATCGAGCAAGCCGATGGCTTTGCTGGCGTCTTTCCAGAGCACAAATATGAAATTGTAAGGAGACTCCAAGAAAGGAAGCACACATGTGGGATGACCGGAGATGGTGTCAATGATGCGCCGGCACTTAAGAGGGCAGATATTGGAATTGCGGTGGCAGATGCAACCGACGCAGCACAAAGTGCGTCGGATATAGTCTTGACAGAGCCCGGTTTAAGTGTGATTGTAAGCGCTGTGCTGACAAGCCGGTCTATTTTCCAGAGGATGAAAAACTATACAATTTATGCTGTTTCCATAACAATTCGGATTGTCCTAGGATTCATGCTTCTTGCTCTTATATGGAAGTTTGATTTCTCACCCTTCATGGTTTTGGTCATTGCCGTACTCAATGATGGTACTATCATGACCATTTCCAAAGATAGGGTGAGGCCATCTCCTATTCCAGATTCATGGAAGCTAAATGAGATTTTTACAACCGGCATTGTTCTTGGTACCTACCTCGCCATCACCACCGTCTTCTTCTTCTGGATTATTTATTCAACTGACTTCTTCCCGGATAAATTCGGTGTGAAATCAATTCGAAATAGCGAAACAGAGCTCACATCAGCTATTTATCTTCAAGTGAGTATTATAAGTCAGGCTCTCATCTTTGTTACCAGATCAAGAAGCTGGTCTTATATTGAAAGGCCTGGCTTATTGCTAGTCACAGCATTTATCATAGCACAATTGGTTGCAACATTCTTGGCTGTGTATGCAAACTTTGCCTTTGCAAAAATCAAAGGAATTGGATGGGGTTGGGCTGCTATCATTTGGCTCTACACTCTTATTATCTATATCCCATTGGATATTCTTAAATTCATTATCCGATATGGATTGAGTGGCAAGGGATGGAACAATATTACTGAAAAGAGGATTGCATTCACATCAAAGAAAGGTTATGGAAAGGGAGAGCGTGAAGCTCAATGGGCTCGAGAAGAACGCACAAGGCATAACCTGAATCCACCTGAAGCTTCAGATATATTGAATGCCGGGAATGATTATAGAGAATTGTCTGAAATTGCAGAGCAAGCTAAAAAACGAGCTGAGATTGCAAGATTAAGAGAGCTTCACACATTGAAGGGGCATGTTGAGTCTGTTGTGAGGCTCAAGGGACTTGATATTGAGACAATGAATCAGCATTACACTGTTTGA 2634 0.4377 MEAAAIMAIALANGGGKPPDWPDFLGIIVLLVINSTISFLEENNAGNAAAALMAGLAPKAKVLRDGKWKEEEASVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGSEVYSGSTVKQGEIEAIVIATGVHTFLGKAAHLVDNTNQVGHFQKVLTSIGNFCIFSIGLGMLVEIIVMYPIQHRPYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIETFAKDVDKDTVLLLGARASRVENQDAIDACIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDADGSWHRVSKGAPEQIIALCNLKGEVMKKAHFIIDGFADRGLRSLAIARQEVPEKTKESPGGPWQFVGLLPLFDPPRHDSADTIRTALELGVNVKMITGDQLAIGKETARRLGMGSNMYPSSSLLGNDKDNTVGGIPVDDLIEQADGFAGVFPEHKYEIVRRLQERKHTCGMTGDGVNDAPALKRADIGIAVADATDAAQSASDIVLTEPGLSVIVSAVLTSRSIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLVIAVLNDGTIMTISKDRVRPSPIPDSWKLNEIFTTGIVLGTYLAITTVFFFWIIYSTDFFPDKFGVKSIRNSETELTSAIYLQVSIISQALIFVTRSRSWSYIERPGLLLVTAFIIAQLVATFLAVYANFAFAKIKGIGWGWAAIIWLYTLIIYIPLDILKFIIRYGLSGKGWNNITEKRIAFTSKKGYGKGEREAQWAREERTRHNLNPPEASDILNAGNDYRELSEIAEQAKKRAEIARLRELHTLKGHVESVVRLKGLDIETMNQHYTV 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30238g00014 877 FunFam Plasma membrane ATPase 58 142 - -
Stsc30238g00014 877 Gene3D - 58 142 - -
Stsc30238g00014 877 Gene3D - 252 551 IPR023214 -
Stsc30238g00014 877 Gene3D - 826 877 - -
Stsc30238g00014 877 FunFam Plasma membrane ATPase 407 562 - -
Stsc30238g00014 877 PRINTS H+-transporting ATPase (proton pump) signature 486 502 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00014 877 PRINTS H+-transporting ATPase (proton pump) signature 514 530 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00014 877 PRINTS H+-transporting ATPase (proton pump) signature 545 570 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00014 877 PRINTS H+-transporting ATPase (proton pump) signature 371 389 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00014 877 PRINTS H+-transporting ATPase (proton pump) signature 686 707 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00014 877 FunFam ATPase 4 plasma membrane-type 500 741 - -
Stsc30238g00014 877 Coils Coil 821 848 - -
Stsc30238g00014 877 NCBIfam HAD-IC family P-type ATPase 27 283 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00014 877 NCBIfam HAD-IC family P-type ATPase 489 599 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00014 877 PANTHER CALCIUM-TRANSPORTING ATPASE 1 809 - -
Stsc30238g00014 877 Pfam haloacid dehalogenase-like hydrolase 251 528 - -
Stsc30238g00014 877 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 732 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc30238g00014 877 Gene3D - 267 414 IPR023299 GO:0000166
Stsc30238g00014 877 FunFam Plasma membrane ATPase 267 414 - -
Stsc30238g00014 877 Gene3D - 20 741 - -
Stsc30238g00014 877 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 771 IPR023298 -
Stsc30238g00014 877 CDD P-type_ATPase_H 18 767 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc30238g00014 877 SFLD p-type atpase 237 565 IPR044492 -
Stsc30238g00014 877 ProSitePatterns E1-E2 ATPases phosphorylation site. 257 263 IPR018303 -
Stsc30238g00014 877 PRINTS P-type cation-transporting ATPase superfamily signature 431 441 - -
Stsc30238g00014 877 PRINTS P-type cation-transporting ATPase superfamily signature 105 119 - -
Stsc30238g00014 877 PRINTS P-type cation-transporting ATPase superfamily signature 409 420 - -
Stsc30238g00014 877 PRINTS P-type cation-transporting ATPase superfamily signature 514 533 - -
Stsc30238g00014 877 PRINTS P-type cation-transporting ATPase superfamily signature 537 549 - -
Stsc30238g00014 877 PRINTS P-type cation-transporting ATPase superfamily signature 255 269 - -
Stsc30238g00014 877 SUPERFAMILY HAD-like 251 561 IPR036412 -
Stsc30238g00014 877 SUPERFAMILY Calcium ATPase, transduction domain A 58 155 IPR008250 -
Stsc30238g00014 877 SFLD Haloacid Dehalogenase 237 565 - -
Stsc30238g00014 877 Pfam E1-E2 ATPase 57 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30238g00014 Stsc-Chr30238 47080 50934 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30238g00014 1 877 Primary Pumps ATPases AT3G42640 81.186 0.0 1465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30238g00014 K01535 - gmx:100782329 1460.28