Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30238g00009 ATGGAAGGTCTTGAACAAGTCAAATCAGAGAACATAGATCTCGCTCAAATACCATTGGAAGAAGTGTTTCAAAAATTGAATTGCACAAAAGAGGGATTGATAAGTGAAAATGCCAAGAATCGATTGGAACTTTTTGGTCCCAACAAGTTGGAAGAAAAGAAGGCAGAAAGCAAATTGCTAAAATTCTTGGGCTTCATGTGGAATCCTTTGTCGTGGGTTATGGAAGCTGCTGCAATAATGGCAATTGCATTGGCCAATGGAGGGGGGAAACCACCAGATTGGCCAGATTTTCTTGGTATAATAGTGCTGCTTGTTATCAACTCCACTATTAGTTTTATAGAAGAAAATAATGCAGGTAATGCTGCAGCAGCACTAATGGCAGGTCTTGCTCCAAAAGCCAAGGTTTTAAGAGATGGAAAATGGAAAGAGGAGGAAGCTGCTGTATTAGTGCCAGGAGATATTGTAAGCATAAAATTAGGAGACATAATTCCAGCAGATGCTCGTCTCTTAGAAGGGGATCCACTCAAGATTGACCAATCAGCACTTACTGGTGAATCATTGCCTGTAACTAAGAATCCAGGTTCTGAAGTCTACTCCGGATCCACAGTAAAACAAGGAGAGATTGAAGCTATTGTCATTGCCACCGGAGTCCACACTTTCTTTGGTAAGGCTGCTCATTTGGTAGACAACACTAACCAAGTTGGCCACTTCCAAAAGGTGTTGACAGCCATTGGTAACTTCTGCATTTGTTCAATTGCTGTGGGAATGCTGGTAGAAATTATTGTTATGTATCCAATTCAACGTAGACCTTATAGAAGTGGAATTGACAATCTCTTGGTTCTTCTGATTGGTGGAATTCCCATTGCCATGCCAACAGTGCTCTCAGTTACAATGGCTATTGGTTCTCATAGGTTGTCTGAACAAGGTGCCATCACTAAGAGGATGACAGCCATTGAAGAGATGGCTGGGATGGATGTTCTTTGCAGTGATAAGACTGGCACCCTCACTCTCAACAAACTCACCGTCGACAAATCTTTGATCGAGAGTTTTGCAAAAGATGTGGACAAAGACACTGTACTTTTGCTTGGAGCTAGAGCATCAAGGGTAGAGAACCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTAGGTGATCCTAAAGAGGCCAGAGATGGCATTACAGAGGTGCATTTCTTGCCCTTCAATCCGGTGGACAAGCGTACGGCTATAACATACATTGATGCCGACGGTAGTTGGCACCGAGTAAGCAAAGGTGCGCCGGAGCAGATCATAGGTCTTTGTAATCTAAAGGGAGATGTCATGAAGAAAGCTCATTCCATTATTGATGGCTTTGCTGATAGAGGCCTCCGATCACTTGCTATTGGTAGACAAGAAGTGCCAGAGAAGACCAAAGAGAGTCCAGGAGGTCCATGGCAATTTGTAGGCCTCTTGCCTCTCTTTGATCCGCCTAGGCACGACAGTGCGGATACCATCCGCACGGCTCTTGAACTCGGAGTCAATGTCAAAATGATCACAGGTGATCAGCTAGCTATTGGCAAGGAGACCGCTCGCAGACTCGGCATGGGAAGTAACATGTATCCTTCTTCCTCCCTCCTTGGCAATGACAAGGATAGTACCGTTGGTGGAATTCCGGTTGATGATCTTATCGAGCAAGCTGATGGCTTCGCTGGTGTCTTTCCAGAGCATAAATATGAAATTGTAAGGAGACTCCAAGAAAGGAAGCACATATGTGGCATGACTGGAGATGGTGTTAATGATGCGCCGGCACTTAAGAGGGCAGATATTGGAATTGCGGTGGCAGATGCAACCGATGCAGCACAAAGTGCGTCGGATATAGTCTTGACAGAGCCCGGTTTAAGTGTAATAGTAAGCGCGGTGTTGACAAGCCGGTCTATTTTCCAGAGGATGAAAAATTATACAATTTATGCTGTTTCCATAACAATTCGGATTGTGGTAGGATTCATGCTTCTTGCTCTTATATGGAAGTTTGATTTCTCACCTTTCATGGTTTTGGTCATTGCCGTACTCAATGATGGTACTATCATGACCATTTCTAAAGATAGGGTGAAGCCATCTCCTACTCCAGATTCGTGGAAGCTAAATGAGATTTTCACAACTGGCATTGTTCTTGGTACCTACCTCGCCATCACCACTGTTTTCTTCTTCTGGATTATTTATTCAACTGACTTCTTCCCGGACAAATTCGGCGTGAAATCAATTCGATATAGTGAAACAGAGCTCACATCAGCTGTTTATCTTCAAGTGAGTATTATAAGTCAGGCTCTCATCTTTGTTACCAGATCAAGAAATTTGTCTTATATTGAAAGGCCTGGTTTATTGCTTCTCACAGCCTTTATCATAGCACAACTGATTGCAACATTCTTGGCTGTGTATGCAAATTTTGCCTTTGCAAAAATCAAAGGAATTGGATGGGGTTGGGCTGCTATCATTTGGCTCTACAGCCTCATTATTTATATCCCATTGGATTTTCTTAAATTAATTATCCGATATGGATTGAGTGGCAAGGGATGGAACAATATTACTGAAAAGAGGACTGCATTCACATCAAAAAAAGGTTACGGAAAGGGAGAGCGTGAAGCTCGATGGGCTCGAGAAGAACGCACAAGGCATAACTTGAATCCACCTGAAGCTTCAGATATATTGAATGCTGGGAATGATTATAGAGAATTGTCTGAAATTGCGGAGCAAGCTAAAAGACGAGCTGAAATTGCAAGACTAAGGGAACTTCACACATTAAAGGGTCATGTTGAGTCTGTTGTGAGGCTCAAGGGACTTGATATTGAGACAATGAATCAACATTATACTCCTCTTGTAGAAGGCAGAAGGCCACACTACCAAAACAAACAAGAAGAATGGAATAGGTCAAGAAACAAAAGAAGGGTCCCAAAACCAAGAAGATCATCATCATCAAATAATTGTGACCCTTTTTTCCTTTATCTATTTGAGTGTTGTGGCCAATGGCCTTTCCCTACTTCTCCTTGCTCTCAAAATCCATTTGATCAAACACCGTCATCATCACCAAAACCGCCGCCAATAGTATATTATTATCCATCTCCACCGCCACCAATTACTTACACACCAAGAATCACACCTCCACCACCACTAGTCCATTATTTTCCACCACCGTTACCACCTTCTCCACCACCACCATTGCCGCCATCGCCACCTCCTCCATCACCGCCACCATCATCACCACCACCACCTAAGCCTGCTTGCCCGCCACCACCATCACCACCACCTGCCGTTCCTTGTTGTGCACCAATAATTCTTATACCTTGTTGTCCATTACCAACTCCATCACCATCACCATCCCCACCACCACCCGCTCCACCGCTAGTTCCATCACCGTCACCGCCGCCTCCATCGTCAGACCCCTCACTACCACCTCTAGTAATTCCACCTCCAATGGCAATAGCCCTTGCTCCTCCCATAGTACCATCATATCCATGGTTATCACCTCCCAACCCCTTCATCACTGACCCTTCTCCTCCAGACACCTCTCTACTTCCACCACCACTTGTCCCCATAACTTGGACACCACCATCAACGGAGTTGCCACCGCAGCTTCCGGTGTTCCCGCCCCCAGATGATCCATTCTCTTCATTCTCATCACCACCTCCATTTCTATCAACACCAACACCAATTGGTCCAGATATCATCATTCCTTCACCGGAATTTCCAGGTAATAATCCTGAAGAACCAACACCATTTACCCCTTCACCAGATATTTTGTTGCCACCACCCTTGGTTCCAGACCTGCCGGATCAACCACCAGCATTTCCTATGCCGGAGACACCGCCTGATGTTTTCTTTGCGCCACCAGAACCAGATCAAGGGGTTGTTCCTGAGCCATGGGAAGTGCCACCATCACCAGAAGAGTTGTTGCCACCACCCATTGGAAATTGA 3948 0.4471 MEGLEQVKSENIDLAQIPLEEVFQKLNCTKEGLISENAKNRLELFGPNKLEEKKAESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWPDFLGIIVLLVINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGKWKEEEAAVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGSEVYSGSTVKQGEIEAIVIATGVHTFFGKAAHLVDNTNQVGHFQKVLTAIGNFCICSIAVGMLVEIIVMYPIQRRPYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIESFAKDVDKDTVLLLGARASRVENQDAIDACIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDADGSWHRVSKGAPEQIIGLCNLKGDVMKKAHSIIDGFADRGLRSLAIGRQEVPEKTKESPGGPWQFVGLLPLFDPPRHDSADTIRTALELGVNVKMITGDQLAIGKETARRLGMGSNMYPSSSLLGNDKDSTVGGIPVDDLIEQADGFAGVFPEHKYEIVRRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAAQSASDIVLTEPGLSVIVSAVLTSRSIFQRMKNYTIYAVSITIRIVVGFMLLALIWKFDFSPFMVLVIAVLNDGTIMTISKDRVKPSPTPDSWKLNEIFTTGIVLGTYLAITTVFFFWIIYSTDFFPDKFGVKSIRYSETELTSAVYLQVSIISQALIFVTRSRNLSYIERPGLLLLTAFIIAQLIATFLAVYANFAFAKIKGIGWGWAAIIWLYSLIIYIPLDFLKLIIRYGLSGKGWNNITEKRTAFTSKKGYGKGEREARWAREERTRHNLNPPEASDILNAGNDYRELSEIAEQAKRRAEIARLRELHTLKGHVESVVRLKGLDIETMNQHYTPLVEGRRPHYQNKQEEWNRSRNKRRVPKPRRSSSSNNCDPFFLYLFECCGQWPFPTSPCSQNPFDQTPSSSPKPPPIVYYYPSPPPPITYTPRITPPPPLVHYFPPPLPPSPPPPLPPSPPPPSPPPSSPPPPKPACPPPPSPPPAVPCCAPIILIPCCPLPTPSPSPSPPPPAPPLVPSPSPPPPSSDPSLPPLVIPPPMAIALAPPIVPSYPWLSPPNPFITDPSPPDTSLLPPPLVPITWTPPSTELPPQLPVFPPPDDPFSSFSSPPPFLSTPTPIGPDIIIPSPEFPGNNPEEPTPFTPSPDILLPPPLVPDLPDQPPAFPMPETPPDVFFAPPEPDQGVVPEPWEVPPSPEELLPPPIGN 1315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30238g00009 1315 SFLD p-type atpase 310 638 IPR044492 -
Stsc30238g00009 1315 Pfam E1-E2 ATPase 130 307 - -
Stsc30238g00009 1315 NCBIfam plasma-membrane proton-efflux P-type ATPase 32 805 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc30238g00009 1315 CDD P-type_ATPase_H 32 840 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc30238g00009 1315 SMART Cation_ATPase_N_a_2 13 86 IPR004014 -
Stsc30238g00009 1315 Gene3D - 899 949 - -
Stsc30238g00009 1315 Pfam haloacid dehalogenase-like hydrolase 324 601 - -
Stsc30238g00009 1315 MobiDBLite consensus disorder prediction 1241 1315 - -
Stsc30238g00009 1315 MobiDBLite consensus disorder prediction 957 971 - -
Stsc30238g00009 1315 MobiDBLite consensus disorder prediction 1113 1147 - -
Stsc30238g00009 1315 Pfam Cation transporter/ATPase, N-terminus 16 80 IPR004014 -
Stsc30238g00009 1315 Gene3D - 325 624 IPR023214 -
Stsc30238g00009 1315 ProSitePatterns E1-E2 ATPases phosphorylation site. 330 336 IPR018303 -
Stsc30238g00009 1315 MobiDBLite consensus disorder prediction 951 984 - -
Stsc30238g00009 1315 Gene3D - 340 487 IPR023299 GO:0000166
Stsc30238g00009 1315 PRINTS H+-transporting ATPase (proton pump) signature 559 575 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00009 1315 PRINTS H+-transporting ATPase (proton pump) signature 444 462 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00009 1315 PRINTS H+-transporting ATPase (proton pump) signature 587 603 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00009 1315 PRINTS H+-transporting ATPase (proton pump) signature 618 643 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00009 1315 PRINTS H+-transporting ATPase (proton pump) signature 759 780 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00009 1315 NCBIfam HAD-IC family P-type ATPase 562 672 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00009 1315 NCBIfam HAD-IC family P-type ATPase 100 356 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30238g00009 1315 MobiDBLite consensus disorder prediction 1168 1235 - -
Stsc30238g00009 1315 Gene3D - 131 215 - -
Stsc30238g00009 1315 PANTHER CALCIUM-TRANSPORTING ATPASE 17 882 - -
Stsc30238g00009 1315 SUPERFAMILY Calcium ATPase, transduction domain A 131 228 IPR008250 -
Stsc30238g00009 1315 FunFam Plasma membrane ATPase 340 487 - -
Stsc30238g00009 1315 SUPERFAMILY Calcium ATPase, transmembrane domain M 12 844 IPR023298 -
Stsc30238g00009 1315 Coils Coil 894 921 - -
Stsc30238g00009 1315 MobiDBLite consensus disorder prediction 1168 1315 - -
Stsc30238g00009 1315 SFLD C1.7: P-type atpase like 310 638 - -
Stsc30238g00009 1315 FunFam ATPase 4 plasma membrane-type 572 814 - -
Stsc30238g00009 1315 PRINTS P-type cation-transporting ATPase superfamily signature 610 622 - -
Stsc30238g00009 1315 PRINTS P-type cation-transporting ATPase superfamily signature 178 192 - -
Stsc30238g00009 1315 PRINTS P-type cation-transporting ATPase superfamily signature 504 514 - -
Stsc30238g00009 1315 PRINTS P-type cation-transporting ATPase superfamily signature 328 342 - -
Stsc30238g00009 1315 PRINTS P-type cation-transporting ATPase superfamily signature 482 493 - -
Stsc30238g00009 1315 PRINTS P-type cation-transporting ATPase superfamily signature 587 606 - -
Stsc30238g00009 1315 SUPERFAMILY HAD-like 324 634 IPR036412 -
Stsc30238g00009 1315 MobiDBLite consensus disorder prediction 1061 1092 - -
Stsc30238g00009 1315 FunFam Plasma membrane ATPase 480 635 - -
Stsc30238g00009 1315 Gene3D - 93 814 - -
Stsc30238g00009 1315 FunFam Plasma membrane ATPase 131 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30238g00009 Stsc-Chr30238 23576 31040 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30238g00009 5 949 Primary Pumps ATPases AT3G42640 79.471 0.0 1558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30238g00009 K01535 - qsa:O6P43_027934 1539.24