Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30237g00026 ATGGAGATGGAGATATCCTCTTGTTTCTTTCTCATTCTTATCTTATCATCATGCCACCATTTCATCATAGCCTCCTCAAACACAACAACCAATGGAGGAGACCAATCAGCACTTCTAGCCTTCAAATCTCAAATCAATTTGGACCGTAGACACGTGTTGTCCACCAATTGGTCCACCACTTTCCCCACGTGCAATTGGATTGGCATCACTTGTGATCCAAACACAACAAGGGTAACATCCTTAAATCTCACAAACATGAACTTGAGTGGGACCCTTCCTCCCCAATTAGGAAACCTAACTTCTCTTCTAAGCCTTGATCTTCACAACAATAGCTTCCATGGCACTGTTCCAAAGGAATTGGGCTTGTTACCTAAATTGAGGGTTCTCAATTTATGCACCAATAACTTTGGTGGTGATTTTCCAACATGGATTGGTGAGTTATCTGAGCTCCAAAGTTTGAGTATTTGTAACAATAGCTTTTCAGGTTCAATCCCTAATTCAATATCTAACTTGTCAAAGTTGGAAAGTTTGAATGTGAGCTTTAATCTCATACATGGAAGCATTCCACCTGAGCTTGGAAGCCTTCACAATCTTAGTCTTCTGGACTTGTCACACAATAAGTTTTCTGGAAAAATTCCTTCTTCAATCTTCAATAATATCTCCACAATCCAAGTGATTAATTTAGCCTATAATGCTTTATCAGGAAGAATTCCTGAAGCCGGGAACCTATCACAATTGGGAAGTATAAATTTGAGCAAGAATAATTTTACAGGGTCCATACCATTGTCTTTTTTCAATGTTACATCACTTAGACAGATTCAATTAACTTACAATAACCTAACTGGTTATCTACCATGGGATCTGTGCCATGCGTTACCAATGCTTGAAATGCTTGATCTCTCTGGGAATTCATTTAATGCTTCAATTCCATCCAGTTTGAATCAATGTAAGAAGCTCAGATATCTGAATATGAACAACAACAAAATTTATGGCCACTTACCAACCGATATTGGGAGGTTAACTATGCTTCAACTATTAGATCTTAGTAACAACAATCTAACAGGTTCACTTCCACAGTCTCTTTTCAACATCTCCACATTGAGACTAATAAACCTTCGGAACAACCAGTTTGGTGGTCAACTTCCTCAAGACATGTGTGAGAATGCTCATTCATTACAACAGATTTCTATTCTGAATAACTATGTTGGTGGAATCATTCCCCCCTCTATTGGCAACTGCACCACATTAACAAGGTTATATCTTGGAGCCAACTCTTTCACAGGCCCCATACCTTATGAGATTGGTGACAAATTAAGAAACCTTCAGATACTGCACTTGCACAACAACACCCTTAAAGGATCAATTCCTCCAAACATCTTCAACCTCTCAGGGTTACAGAGTTTGTCACTCTCAAACAACCACTTATCAGGAAATCTTCCAATTCATGCAAATAACACTCAATCCAATCTTCAGTTCCTGTTCCTTTCAGGGAACAATCTTAGTGGAGTTATACCTGATTCAATTGGCAACTTCAGAAGCCTCCAGCTTCTGTATATCTCAGATAACAGCTTCACTAATGATCCTTCTTCCCAGGAGCTTGGTTTCCTCACTTCACTAACAAAGTGCAGGAATTTGCAGAAGCTTCTCTTGTCATTTAATCCTCTTCATGGAACACTTCCAAACTCCATTGGAAACCTTTCAGAAACTCTTGAGTTTTTTGATGCAGAGAGTTGTAACATCAAGGGTCAGATTCCTCCACAGGTTGGAAACTTGAAGAACTTGTATGGTTTGAATCTCAATGATAACCAGCTTGTTGGAGAGATTCCAACAACAATTGGGGATATGCAACTTCAAAGATTAGACCTATCCAGCAATCAATTGAAGGGCTATATCCCATCACAGATTTGTCAGATGAAGAATTTGAACCAGTTGCTTCTTAGCAACAATCGAATTTTCGGACCGATTCCTAAATGTGTGGATCATCTTTCTTCTCTGAGAATACTTAACTTAGATTCCAATAATCTAAACTCCACAATACCTTCTACACTTTGGAGTCTTAGTGATATCTTGGAGGTGAATTTATCCTCAAATGGTTTTGAAGGTTCTTTGCCAATTGATATAAGCAGCATGAATGCTGTGATCAATTTGGATGTTTCACATAACAAGCTTTCTGGAAAGATTCCCACTGGAATTGGTAGCTTGCAGAGGATATTGAATCTCTCATTAGCTTATAATATGATACAAGGTCCTATTCCTGATTCAATTGGGAATATGATAAGCTTGGAATTTCTTGATTTTTCTCATAATGTTTTATCAGGAACTATTCCAAAGTCTTTGGAGAATCTTGTTTATCTCAAGTTCATAAACTTGTCATATAATAGGCTATATGGTGAGATTCCTTCTGGTGGCAACTTTTCAAATTTCAGATCTCAATCATTCATGATGAATGATGATCTCTGTGGAAACTCAAACTTTGGAGTGCCACCATGTTCCAATTATGATGCTAAACATAAGAGAATCAAAGCTCTGAAGATAGCAATACCCTTGATTGTAGCATGCATGATTCTTGCATGTGCAGCTATTTTGATATACAGAAGAAAACTGGGGACGGATTCAATTGTTGGAGACGTGCCGTCGTTTCGATTTCCAAGTAGGATTTCCTACTTTGAAATCATGGAGGCAACACAGAAGTTAGATGAGGGAAATCTTATAGGAAGAGGGGGTTTAGGTTCTGTTTTCAGAGGCCAGCTTTCAAATGGAACTGTCATTGCTGTTAAAGTGTTCAATTTGGAGTCACAACAAGCACCAAAGAGCTTTGATGCAGAATGCGAAGCGATGCGCAATCTTCGCCATAGAAATCTTGTTAAAGTCATCACCAGTTGCTCAAATAACATTGATTTCAAGGCCTTGGTGATGGAGTATGTTCCAAATGGGAACTTGGAGAAGTGGTTGTATTCTCATAACTACTTCCTATCTTTCATGGAAAGGTTGAAGATAGTGATAGATGTTGCATGTGCATTGGAGTATCTGCACCATGGTAACACTAGAACTGTGGTGCATTGTGACTTGAAGCCAAGTAATGTTCTGTTGGATGAAGATATGGTTGCACATGTTTGTGATTTCAACATTGCTAAGCTTTTGGAAGAAGGTCAATCTGAAATTCATACAAACACATTAGCCACACTTGGTTATATTGCTCCAGAATATGGCTCAAAAGGAATTGTTTCCATTAAAGGAGATGTGTACAGCTATGGTATTATGGTGATGGAAGTGTTCACAAGAAAGAAACCAACTGATGAAATGTTTTCTGAGGAAGTAAGCTTAAGGTCATGGATCCAAGAGTCATTGGCAGGTGGGATAACTGAGGTTATGGATCCTAATCTGATGGAGGGTGAGGAACAAGTTATTTCTGCCATGGAATTAGCACTCTCAAATATCATGGAGCTGGCTCTGAATTGCACAGAGGAATCTCCAAATGAAAGAATAAGTATGAAGGAAGCGTTTGATCGGTTAAACAAAATCAAAACCACATTTCTGAAGATGACACAAGGAAATTGA 3558 0.3853 MEMEISSCFFLILILSSCHHFIIASSNTTTNGGDQSALLAFKSQINLDRRHVLSTNWSTTFPTCNWIGITCDPNTTRVTSLNLTNMNLSGTLPPQLGNLTSLLSLDLHNNSFHGTVPKELGLLPKLRVLNLCTNNFGGDFPTWIGELSELQSLSICNNSFSGSIPNSISNLSKLESLNVSFNLIHGSIPPELGSLHNLSLLDLSHNKFSGKIPSSIFNNISTIQVINLAYNALSGRIPEAGNLSQLGSINLSKNNFTGSIPLSFFNVTSLRQIQLTYNNLTGYLPWDLCHALPMLEMLDLSGNSFNASIPSSLNQCKKLRYLNMNNNKIYGHLPTDIGRLTMLQLLDLSNNNLTGSLPQSLFNISTLRLINLRNNQFGGQLPQDMCENAHSLQQISILNNYVGGIIPPSIGNCTTLTRLYLGANSFTGPIPYEIGDKLRNLQILHLHNNTLKGSIPPNIFNLSGLQSLSLSNNHLSGNLPIHANNTQSNLQFLFLSGNNLSGVIPDSIGNFRSLQLLYISDNSFTNDPSSQELGFLTSLTKCRNLQKLLLSFNPLHGTLPNSIGNLSETLEFFDAESCNIKGQIPPQVGNLKNLYGLNLNDNQLVGEIPTTIGDMQLQRLDLSSNQLKGYIPSQICQMKNLNQLLLSNNRIFGPIPKCVDHLSSLRILNLDSNNLNSTIPSTLWSLSDILEVNLSSNGFEGSLPIDISSMNAVINLDVSHNKLSGKIPTGIGSLQRILNLSLAYNMIQGPIPDSIGNMISLEFLDFSHNVLSGTIPKSLENLVYLKFINLSYNRLYGEIPSGGNFSNFRSQSFMMNDDLCGNSNFGVPPCSNYDAKHKRIKALKIAIPLIVACMILACAAILIYRRKLGTDSIVGDVPSFRFPSRISYFEIMEATQKLDEGNLIGRGGLGSVFRGQLSNGTVIAVKVFNLESQQAPKSFDAECEAMRNLRHRNLVKVITSCSNNIDFKALVMEYVPNGNLEKWLYSHNYFLSFMERLKIVIDVACALEYLHHGNTRTVVHCDLKPSNVLLDEDMVAHVCDFNIAKLLEEGQSEIHTNTLATLGYIAPEYGSKGIVSIKGDVYSYGIMVMEVFTRKKPTDEMFSEEVSLRSWIQESLAGGITEVMDPNLMEGEEQVISAMELALSNIMELALNCTEESPNERISMKEAFDRLNKIKTTFLKMTQGN 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30237g00026 1185 FunFam Inactive leucine-rich repeat receptor-like protein kinase 537 830 - -
Stsc30237g00026 1185 FunFam Leucine-rich repeat receptor protein kinase EMS1 145 220 - -
Stsc30237g00026 1185 SMART serkin_6 898 1178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30237g00026 1185 FunFam Leucine-rich repeat receptor-like kinase 34 144 - -
Stsc30237g00026 1185 SUPERFAMILY RNI-like 486 802 - -
Stsc30237g00026 1185 SUPERFAMILY L domain-like 33 304 - -
Stsc30237g00026 1185 CDD STKc_IRAK 904 1174 - -
Stsc30237g00026 1185 Pfam Leucine rich repeat 245 304 IPR001611 GO:0005515
Stsc30237g00026 1185 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Stsc30237g00026 1185 SUPERFAMILY L domain-like 284 540 - -
Stsc30237g00026 1185 ProSiteProfiles Protein kinase domain profile. 898 1179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30237g00026 1185 Gene3D Ribonuclease Inhibitor 388 533 IPR032675 -
Stsc30237g00026 1185 Gene3D Ribonuclease Inhibitor 188 289 IPR032675 -
Stsc30237g00026 1185 Gene3D Transferase(Phosphotransferase) domain 1 975 1183 - -
Stsc30237g00026 1185 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 387 479 - -
Stsc30237g00026 1185 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Stsc30237g00026 1185 FunFam Serine-threonine protein kinase plant-type 880 974 - -
Stsc30237g00026 1185 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Stsc30237g00026 1185 Gene3D Ribonuclease Inhibitor 290 387 IPR032675 -
Stsc30237g00026 1185 PRINTS Leucine-rich repeat signature 343 356 - -
Stsc30237g00026 1185 PRINTS Leucine-rich repeat signature 462 475 - -
Stsc30237g00026 1185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1018 1030 IPR008271 GO:0004672|GO:0006468
Stsc30237g00026 1185 PANTHER UNNAMED PRODUCT 438 1101 - -
Stsc30237g00026 1185 SUPERFAMILY Protein kinase-like (PK-like) 880 1176 IPR011009 -
Stsc30237g00026 1185 Gene3D Ribonuclease Inhibitor 540 832 IPR032675 -
Stsc30237g00026 1185 SMART LRR_typ_2 591 615 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 340 364 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 616 638 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 662 686 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 488 510 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 438 462 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 758 782 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 292 316 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 99 123 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 195 219 IPR003591 -
Stsc30237g00026 1185 SMART LRR_typ_2 171 194 IPR003591 -
Stsc30237g00026 1185 Pfam Protein kinase domain 901 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30237g00026 1185 Gene3D Phosphorylase Kinase; domain 1 881 974 - -
Stsc30237g00026 1185 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 221 386 - -
Stsc30237g00026 1185 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 975 1184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30237g00026 Stsc-Chr30237 175323 181467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30237g00026 3 1175 Receptor kinase-like Gene Family AT5G46330 35.465 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc30237g00026 Pkinase 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30237g00026 - K13420 qsa:O6P43_012786 1140.18