Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30236g00016 ATGGAGAACGATCAATGGCGTCTCTATGAACATGACCCACTTCTTCTAACCGACGTTTCTTTCCAACAAGAAACTGAAACCTCTTCCACTCACTGCTCCAACTACGTTGATTCACACGCATCGCTGAGCTCTGGTTGTTCAGCCATGGCTGCTGATCCCGAATCTTGTGGTGGAAGCCCAAGCTATGGTGTAGGATTCCAAGGGAAAAGTGGACGCTTTGAAATGAATAGTGTGGAATTTGATGATCCTGTTGTGAGAACTGTTCTTGATGGTAGAACAATGTTGGGGTATTCTCTGACTTCACCAGATTTGGTGATCTGTGCTGGATCACCAGATATTGCTGGAATCAGCTATGGTGATTCCCCAGAGGTGTTTCATAACAAGAATTGCAAGAATTTGGAGTCATCCATGGAGGTTTCCCTAGAGAATGGAATCAATGGCTCTGAATTTGACAATGGCCATAAGACCCCTACTGTTAAATTCTCTAACTTGTGTCAAACTTTTACACATGATGATGTGATTGTGTCCCCTGATGCTTCCTTCGAGCTTCTTCCACCGCCTTTAACCACGGATGAGTCGCCCCTAGACTACCCTCCAAGAGAAAATGAAATTCTAGAAGATATTTGTGTGTCCCAGGAAGCTGAATTGGAATACTCAGAAGATACTGAGAACATTGGAGTGGAAGAGAAGTATGAGAAGCTGAAAAAAGTGCTGGCGGAAACAACGAGGGAGTTGAAAATGAGTAGGAGGGAGAAAGAGCAGAAAAGCAAGGAATGCCAAGAAGCTTGGAACTCCTTGAAAGAGCTACAGAATGAGCTCATGCGCAAGTCGATGCATGTAGGATCGTTGGCTTTTGCCATAGAGGGGCAAGTGAAAGAGAAAAGCAAGTGGTTTTCATCATTAAGAGACTTGATGAGGAAATTAAAGGTCATGAAAATTGAGCACATCAAGCTCTTAGAGGAAGCAGAGGCATACAGGAAATGTCAAGCAGAAATGAGCGAAATTGGGTTAATGATAAATTCCAAAATAAATGAGCAACAAGAATCTCACGAAGATCTCAAGTTCAAATATATAGAGGGGGAAAAGGAACGAAAAGAGCTTTACAACAAGGTTTTGGAATTGAGAGGAAACATACGCGTGTTTTGCAGGTGTAGGCCCCTCAATGCTGAAGAGTTAGCAGCAGGAGCCACAATGGCCGTAGATTTTGAATCTGCGAAAGATGGTGAGCTAACTGTAATGTCAAATGGTGCTCCTAGAAAGACTTTTAAGTTCGATGCTGTCTTTGGCCCCCAAGCTGAACAAGCTGATATCTTCGAAGACACGGCACCATTTGCAACCTCAGTTCTAGACGGGTACAATGTTTGCATTTTCGCATACGGGCAGACCGGAACCGGGAAGACTTTCACAATGGAGGGCACGGAAGAGGCTCGCGGAGTTAATTTCAGGACTCTTGAGAAACTGTTTGACATAATCAGGGAGAGACAGACACTTTACCATTACGATGTGTCTGTGAGTGTTTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGTTTTCAGGAAATCAGCCTGGAACAACTGCAAGAAGATTGGAAATAAGGCAAGCAGGTGAAGGAATGCATCATGTTCCTGGGTTAGTTGAGGCTCATGTGAACAATATGAGTGAAGTCTGGGAAGTCCTTCAAACTGGTAGCAATTCAAGGGCTGTAAGTTCAACCAATGCAAATGAACACAGCAGTAGATCCCACTGCATTCATTGTGTTATGGTTAAAGGGGAGAACTTGTTGAATGGGGAATGCACAAGAAGCAAGTTATGGTTGGTGGACTTAGCAGGTAGCGAGCGAGTAGCCAAGACAGACGTCCAAGGTGATCGACTGAAGGAGGCACAAAACATTAACAGGTCTTTGTCAGCACTTGGAGATGTCATATCTGCCCTTGCAACAAAAAGTCCTCATATCCCTTTCAGGAACTCGAAACTTACGCACTTGCTTCAAGACTCATTAGGAGGGGATTCGAAGGCGCTCATGTTTGTACAAATCAGTCCTAATGAAAGTGATTTGGGTGAGACAGTTTGCTCTCTGAACTTTGCTAGTCGAGTAAGGGGAATAGAACTCGGCCCTGCAAAAAAGCAGTTGGACACTACTGAACTTCTTAGACACAAACAGATGGCTGAGAAAACCAAACAAGAGGCAAAGCTTAAGGAGTTCCAACTCAAGAAGATGGAGGAAACAATCCATGTATTAGAATCCAAGATGAAAGAAAGAGATAACAAAAACAAGAGCCTGCAAGACAAAGTCAAGGAATTGGAAGCACAACTTCTCATCGAAAGAAAGCTGGCGCGCCAACATGTGGATTCGAAAATAGCCGAGCAGCACCAAATGAAGCAACAAGAAGAGCCAACCAGTTCACTTCCGAGGCCACCGCTTGTGAATCGACCACTAAATATCAACAAGAATTTCAATGATCCGGTGAGTGGTGGATGGTGCAAGGACCAAGTAAGTTCGGCTAAACCACTCATGGAGAACAACTTCTTAAAACCTCTATTACCCTTTTCCACAATGGAGAACTCCATCAATTGTATTGATTACGCCGAAAAGGAAAACAACCCTGCTATAGCCGGGAATCTCCTACTGCCAAAAAGGCCTGGAAGAGCTTCTATCTGCACAATGACACAGCGTGTCCCTTCTGCCATTGCAGCAAGGCGTAACTCTCTCATTCCACTCCCGAGCATACCAAGCTTAACTCAATTCCAATCGCCATTGTTACCTATCGCTCCGAACCAAGCCACGGACCATAAAGATGTCAATAAAGAATTAGACAGCAAGTTTGTGCAGGCAGCACAAAGTCAATGTGAGAGTCCAAAGGAAGTAAGAAGTGGTGTTAAGAAGATAGGTAGCATACTAAGAAGAAGCCTTCATAAGAAGATACAAGTGAAGTCTCCACAAATGAGAAGGGTTGGTGTAAATGTAGGGATGGAGAAGGTTAGAGTTTCCATTGGAAATAGAGGGAGATTGGGACAAAGGGTGCAAGGTTTAAGTGCTAGAAGAGGTAAGGAGATCCAACAAAAGAATAGTCATAAGGAAAAGGAAAGGGGTTGGATATGA 3105 0.4377 MENDQWRLYEHDPLLLTDVSFQQETETSSTHCSNYVDSHASLSSGCSAMAADPESCGGSPSYGVGFQGKSGRFEMNSVEFDDPVVRTVLDGRTMLGYSLTSPDLVICAGSPDIAGISYGDSPEVFHNKNCKNLESSMEVSLENGINGSEFDNGHKTPTVKFSNLCQTFTHDDVIVSPDASFELLPPPLTTDESPLDYPPRENEILEDICVSQEAELEYSEDTENIGVEEKYEKLKKVLAETTRELKMSRREKEQKSKECQEAWNSLKELQNELMRKSMHVGSLAFAIEGQVKEKSKWFSSLRDLMRKLKVMKIEHIKLLEEAEAYRKCQAEMSEIGLMINSKINEQQESHEDLKFKYIEGEKERKELYNKVLELRGNIRVFCRCRPLNAEELAAGATMAVDFESAKDGELTVMSNGAPRKTFKFDAVFGPQAEQADIFEDTAPFATSVLDGYNVCIFAYGQTGTGKTFTMEGTEEARGVNFRTLEKLFDIIRERQTLYHYDVSVSVLEVYNEQIRDLLFSGNQPGTTARRLEIRQAGEGMHHVPGLVEAHVNNMSEVWEVLQTGSNSRAVSSTNANEHSSRSHCIHCVMVKGENLLNGECTRSKLWLVDLAGSERVAKTDVQGDRLKEAQNINRSLSALGDVISALATKSPHIPFRNSKLTHLLQDSLGGDSKALMFVQISPNESDLGETVCSLNFASRVRGIELGPAKKQLDTTELLRHKQMAEKTKQEAKLKEFQLKKMEETIHVLESKMKERDNKNKSLQDKVKELEAQLLIERKLARQHVDSKIAEQHQMKQQEEPTSSLPRPPLVNRPLNINKNFNDPVSGGWCKDQVSSAKPLMENNFLKPLLPFSTMENSINCIDYAEKENNPAIAGNLLLPKRPGRASICTMTQRVPSAIAARRNSLIPLPSIPSLTQFQSPLLPIAPNQATDHKDVNKELDSKFVQAAQSQCESPKEVRSGVKKIGSILRRSLHKKIQVKSPQMRRVGVNVGMEKVRVSIGNRGRLGQRVQGLSARRGKEIQQKNSHKEKERGWI 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30236g00016 1034 ProSitePatterns Kinesin motor domain signature. 603 614 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc30236g00016 1034 MobiDBLite consensus disorder prediction 1004 1034 - -
Stsc30236g00016 1034 Coils Coil 224 272 - -
Stsc30236g00016 1034 PANTHER KINESIN-LIKE PROTEIN KLP-3 198 931 IPR027640 GO:0003777|GO:0007018
Stsc30236g00016 1034 MobiDBLite consensus disorder prediction 1019 1034 - -
Stsc30236g00016 1034 MobiDBLite consensus disorder prediction 787 809 - -
Stsc30236g00016 1034 FunFam kinesin-like protein KIN-14R 322 705 - -
Stsc30236g00016 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 740 IPR027417 -
Stsc30236g00016 1034 CDD KISc_C_terminal 375 705 - -
Stsc30236g00016 1034 SMART kinesin_4 375 711 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc30236g00016 1034 ProSiteProfiles Kinesin motor domain profile. 377 703 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc30236g00016 1034 Coils Coil 724 779 - -
Stsc30236g00016 1034 PRINTS Kinesin heavy chain signature 451 472 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc30236g00016 1034 PRINTS Kinesin heavy chain signature 573 590 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc30236g00016 1034 PRINTS Kinesin heavy chain signature 604 622 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc30236g00016 1034 PRINTS Kinesin heavy chain signature 653 674 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc30236g00016 1034 Gene3D Kinesin motor domain 321 705 IPR036961 -
Stsc30236g00016 1034 Coils Coil 301 321 - -
Stsc30236g00016 1034 Pfam Kinesin motor domain 383 703 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30236g00016 Stsc-Chr30236 123966 129519 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30236g00016 352 731 Calmodulin-binding Proteins AT5G65930 43.342 1.64e-83 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30236g00016 K10406 - gmx:100817247 1583.54