Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30236g00011 ATGACCACCTGTTTTCCTTTCTTCTTCAGTAAGGTCTCATCTTCAGCAAGACAAGAATCACACCCAAACACTGATGAAGATCTATCTGGTCTTCAACATGTTAGACTTTACACATACAAAGAACTAAGAAAGGCAACTGATGATTTTAGTCCAGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTATAAGGGACGGCTTAAAGATGGAAGACTTGGTGCTATAAAAGTTCTTTCAGCAGAATCCAGACAAGGGGTGAAGGAATTCTTGACAGAGATTAATGTGATATCAGAAATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGTTGTGTGGAAAGAAATAACAGAATATTAGTCTACAATTATCTTGAGAATGCCAGTCTTGCACAATCTCTTCTAGTTGGAGATCACACTAACCTTCTCTTCAATTGGCAAACTCGACGTAAAATAAGCATTGGGGTCGCACGCGGGCTAGCATTTCTTCATGAGGAAGTAAGGCCTCATATTGTTCATAGAGATATAAAAGCAAGTAATATTCTACTAGACCGAGATCTTACTCCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACGCGAGTAGCCGGAACATTAGGTTATTTGGCACCGGAATACGCAATAGGCGGGAAGCTGACACGAAAAGCCGATATTTACAGTTTCGGTGTTCTGCTGATGGAGGTAGTTTGTGGAACATGTAACGTAAATTCAAGATTACCTATGGAAGAACAATTTCTCCTAGAAAGGACATGGGATCTTTATGAGCGAAACGAATTGGTAGCACTCGTAGACATAACACTAAACGGAAAATTCGACGCCGAGCAGGCCTGCAGGTTCCTCAAGATTGGCCTTCTTTGCACTCAAGATTCCCCGAGGCTCCGGCCGTCGATGTCTTCAGTAGTAAAGATGCTCACCGGAGAAATGGCTGTTGATGACAGCAAGATAGCAAAACCAGCCTTAATTACTGATATTATGGACCTTAAAGTTAGAAAGAAGCAAGGGATTAATAATAACTGTGATATGAAGACAACATCTACATACAACACAAACACATCTTCACAGGGTAGTGCTGCTAGCACCATGTCATTGTCATCATCTCCTTCTACTGCTATAACTACTTCAACCTTCATTGCAAGATATGATCAAACCATGTAG 1203 0.4073 MTTCFPFFFSKVSSSARQESHPNTDEDLSGLQHVRLYTYKELRKATDDFSPANKIGEGGFGSVYKGRLKDGRLGAIKVLSAESRQGVKEFLTEINVISEIEHENLVKLYGCCVERNNRILVYNYLENASLAQSLLVGDHTNLLFNWQTRRKISIGVARGLAFLHEEVRPHIVHRDIKASNILLDRDLTPKISDFGLAKLIPANMTHVSTRVAGTLGYLAPEYAIGGKLTRKADIYSFGVLLMEVVCGTCNVNSRLPMEEQFLLERTWDLYERNELVALVDITLNGKFDAEQACRFLKIGLLCTQDSPRLRPSMSSVVKMLTGEMAVDDSKIAKPALITDIMDLKVRKKQGINNNCDMKTTSTYNTNTSSQGSAASTMSLSSSPSTAITTSTFIARYDQTM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30236g00011 400 CDD STKc_IRAK 55 322 - -
Stsc30236g00011 400 FunFam cold-responsive protein kinase 1 19 124 - -
Stsc30236g00011 400 SMART serkin_6 49 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30236g00011 400 Pfam Protein kinase domain 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30236g00011 400 ProSiteProfiles Protein kinase domain profile. 49 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30236g00011 400 Gene3D Phosphorylase Kinase; domain 1 19 124 - -
Stsc30236g00011 400 SUPERFAMILY Protein kinase-like (PK-like) 24 320 IPR011009 -
Stsc30236g00011 400 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 361 - -
Stsc30236g00011 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Stsc30236g00011 400 Gene3D Transferase(Phosphotransferase) domain 1 125 336 - -
Stsc30236g00011 400 FunFam cold-responsive protein kinase 1 125 336 - -
Stsc30236g00011 400 MobiDBLite consensus disorder prediction 359 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30236g00011 Stsc-Chr30236 72978 75906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30236g00011 23 375 Receptor kinase-like Gene Family AT1G07650 49.014 7.51e-107 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30236g00011 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30236g00011 - - gmx:100782320 580.867