Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30236g00001 ATGAGCAACATAAGTTTGGTAGAGGCAAGGCTTCCACCAGGGTTCAGATTTCATCCAAAAGATGAAGAGCTTGTTTGTGATTACTTGATGAAGAAGCTCACAAACAATGAATCCCTTCTCTTGATTGATGTTGACCTCAACAAGTGTGAGCCATGGGATATTCCTGCATGTGTGGGAGGGAAGGAGTGGTACTTCTATACACAGAGAGACAGAAAGTATGCAACGGGGCTCCGTACAAACAGAGCAACAGCATCTGGGTATTGGAAGGCCACTGGTAAGGACAGGGCTATCCTTAGGAAGGGCACCCTTGTTGGCATGAGAAAGACTTTGGTCTTCTACCAAGGTAGGGCTCCCAAAGGCAGAAAGACTGAGTGGGTTATGCATGAGTTTCGCATTGAACCTCCCCTTCCTCCTCCTAAGACTACTTCTTCCAAGGAAGATTGGGTGTTATGTAGGGTGTTCTACAAGAACAGAGAAGTTGCTGGCAAACCTAATAATAATAGCATTGGAAGCTGCTATGATGACACAGGCTCTTCATCTCTTCCACCATTAATGGATTCTTACATCAGCTTTGACCAACAACAACAACAACATGACTATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCATCACTCACAAACAAGCCCTATTTTCAACCACATAATGGAGCCTAAGTTATTCCCTACCAACAACATCAACAACAATAACAATAATGCAACTTTATATGGTGGTGGAGGAGGAACTACTACTACTACTACTGCTACAACACCCAATTTGGGTTCTTGCTTAGACCCTTTTTCATGTGATAGGAAAGTATTGAAAGCTGTTTTGAGTCAGCTCACAAATATGGAAAGAAATATACCTAATAATAATAATAGTCTAAAAGGGTCACCAAGCTTAGGAGAAGGTAGTTCTGAGAGTTACTTATCTGAGGTTGGCATGCCCAATTTGTGGAACAATTATTCATAA 972 0.4218 MSNISLVEARLPPGFRFHPKDEELVCDYLMKKLTNNESLLLIDVDLNKCEPWDIPACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRAILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEPPLPPPKTTSSKEDWVLCRVFYKNREVAGKPNNNSIGSCYDDTGSSSLPPLMDSYISFDQQQQQHDYEQVPCFSIFSHHSQTSPIFNHIMEPKLFPTNNINNNNNNATLYGGGGGTTTTTTATTPNLGSCLDPFSCDRKVLKAVLSQLTNMERNIPNNNNSLKGSPSLGEGSSESYLSEVGMPNLWNNYS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30236g00001 323 MobiDBLite consensus disorder prediction 285 309 - -
Stsc30236g00001 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 221 - -
Stsc30236g00001 323 SUPERFAMILY NAC domain 2 157 IPR036093 GO:0003677|GO:0006355
Stsc30236g00001 323 Gene3D NAC domain 20 161 IPR036093 GO:0003677|GO:0006355
Stsc30236g00001 323 Pfam No apical meristem (NAM) protein 12 132 IPR003441 GO:0003677|GO:0006355
Stsc30236g00001 323 ProSiteProfiles NAC domain profile. 11 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30236g00001 Stsc-Chr30236 4118 11394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30236g00001 2 320 NAC Transcription Factor Family AT1G56010 58.160 7.73e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30236g00001 NAM 7.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30236g00001 - - ahf:112703413 514.612