Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30235g00007 ATGGATTACTCAGAAATTGAGATTCCTGAACCATTTTTATGCCCAATTTCACTTCACCTAATGAGAGAGCCTGTTACTGTTTCAACAGGAATCACATATGATAGGGAATTCATAGAGAGATGGTTATTCTCATGCAAGAATTTCACTTGCCCTGTTACAAAGGAACAGGTCTTGCAAACAGAGGATCTTACTCCAAACCACACTCTTCAAAGGCTGATCCAAAATTGGTGCACTCATAATCATGTCTCACTTGATGAAACAACTCAGCATGATTCTACTTCAACCATCGAGAAAGCTCAAGTTGTGAAGCTCTTGAATGAAGCAAAGGGGTTTTCACATGATGAGAAATTGAAGTTTCTCAAATGGATTAAAACAATTGCTCTTGAGAGTGAAAGTAACAAGCAGTGTTTGCAATCTGCAGGGGCAATAGATTTCTTGGCTTCAACAATGGATGAAGCAGATTCAACTTTGTTGATCACTGAAGTAGGTACTGAACTCATGTTTATATTGAATCCTTCAATATATCAGTTAAAATATCTTATAAACAATGAAAAGATTCAGTTTTTTGAGTCATTGTTCCGTGTACTGAGACATGGAAACCAAGAATCTAGAACTTATGCAACATTGCTATTGAAATCGTGTTTTGGGGTGGCCAATAATCCAAACCAATTGAGTTGTGTTAAAACCGAATTTTTCTTCGAAATCTCAAGAGTGATAAGGGAAAAGATCTCGCACGAAGCTTCCAAGGCCGCGCTAAAGCTTCTTGTGGATCTTTGTTCCTGGGCAAGGAACAGGGTCAAAGCAGTCGAGGCTGACATAGTACTAAACCTCATTGATCTCCTCGTTGATACTAACAATGTTACCGAAAGACGGACTTGTGAACTCATATTGATAGCTCTGGATAGGCTCTGCGGCTGCGCAGAAGGGCGCGCCGCCTTGTTGAGCCATGGTGCCGGAGTTGCCATCATTTCGAAGAAGATTCTGAGGGTTTCTTGCGTTGCAAGCGATAGAGGTATTAAGATTTTGGCTATAGTTTGTAGGTATTCAGCAACACCTAATTTGCTTCAAGAGATGTTGGTAGTTGGTGCTGTTTCTAAGTTGTGTTTGGTGCTTCAAATGGATAATGGGGTTTTCAATAAGGCTAAGGAGAGGGCTAGTGAGATTCTCAAGTTACATTCAAAGGTTTGGAAAAATTCCCCATGTATTCCTCTTAATTTGCTTTCAATCTATCCATGA 1236 0.3989 MDYSEIEIPEPFLCPISLHLMREPVTVSTGITYDREFIERWLFSCKNFTCPVTKEQVLQTEDLTPNHTLQRLIQNWCTHNHVSLDETTQHDSTSTIEKAQVVKLLNEAKGFSHDEKLKFLKWIKTIALESESNKQCLQSAGAIDFLASTMDEADSTLLITEVGTELMFILNPSIYQLKYLINNEKIQFFESLFRVLRHGNQESRTYATLLLKSCFGVANNPNQLSCVKTEFFFEISRVIREKISHEASKAALKLLVDLCSWARNRVKAVEADIVLNLIDLLVDTNNVTERRTCELILIALDRLCGCAEGRAALLSHGAGVAIISKKILRVSCVASDRGIKILAIVCRYSATPNLLQEMLVVGAVSKLCLVLQMDNGVFNKAKERASEILKLHSKVWKNSPCIPLNLLSIYP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30235g00007 411 Gene3D - 99 392 IPR011989 -
Stsc30235g00007 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 96 IPR013083 -
Stsc30235g00007 411 CDD RING-Ubox_PUB 9 63 IPR045210 -
Stsc30235g00007 411 PANTHER WDSAM1 PROTEIN 4 403 IPR045185 GO:0061630
Stsc30235g00007 411 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Stsc30235g00007 411 SUPERFAMILY ARM repeat 112 377 IPR016024 -
Stsc30235g00007 411 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Stsc30235g00007 411 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Stsc30235g00007 411 SUPERFAMILY RING/U-box 4 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30235g00007 Stsc-Chr30235 58047 59294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30235g00007 5 411 U-box Gene Family AT2G35930 46.814 7.26e-122 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30235g00007 - - gmx:100786877 464.922