Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30235g00006 ATGATGAAGGAGCCTGTAACTGCCATTACAGGCATAACATACGAAAGAGAAAGCATTGAGCAATGGCTAATGAAGGCCAAAGACTGCGTTTGCCCCGTCACCAAGCAACCGTTGCCGCGAAGCTCGCAATATTTGACCCCCAATCACACTCTGAGGAGATTGATTCAGGCTTGGAGTGAAGCGAATATTATTACTAATAATGCGTCTAGAACCAGCCATGGTGGTGGTGGCGGTGGTGTTCATGAACAGGTTCCGGCGGCTCTTGATATTGAGAAGCTCGTGAAGGATCTTAAGGTTCCTCGTAGGAATCAAAGAGCGTTGGAGAAGTTGCATGGTTTTGCCATGGAAAGTGAGAGGAATAGAGCTTCCATTGCTGAGGCTGGTGTAGCTAATGCCATGGTTATGCTCATCAACCACAGTTTCAAACAAGGGAAGACGATGATGTGCCTAGAAGAAGCTCTAACGATTCTTCATGTTACATGGAATATACCATGTAGGACCAACATGAAGGCTCTTGTTGGAGAAAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGAACAACAACAACAACAATGTGAAGATAGTAAACCAAGCAATGCCCTTATTGAAGTTGACAATTGAAAACACAAATCCAACAATCTTAGGGAACTTGAACTTCCAATTCTTCAAGGAAATGGTGAGAGTATTGGGGAAAAGAACAATATCTCAACAAGCCCTAAAATCCACCTTGCAAATCCTCACAGAAACATGCCCTTTGGGTAAAAACCGAAAACGGATTGTGGAATCGGGTGCGGTTACAGAACTAATCGAACTTGAACTCGAAAAACCGGAGAAAAACATCTCGGAACTCATATTCAACCTTCTAGCACATCTATGTTCTTGTGCTGAAGGTAGAGAAATGTTTCTTAAACATGCCGCGGCGATAGCAATGGTCTCTAAGAGGATTCTTAGGGTTTCTTCGGCGACGGATGATCGAGCAGTGCATATTTTATTGATGATCGGAAAATATTCTGGATCAAATGACATTGTTCTTGAGATGCTTAGGGTTGGTGCTGTGTCCAAGCTTTGCATGGTGATGCAAGCAGATTGTGCATCTTATTTGAAAGAAAAAGCAAGAGAGATACTTAGGTTGCATTCCAAAGTTTGGAGTAACTCACCTTGTATACAAGTTTACTTATTAACTAGGTACCAAAGGTGA 1203 0.4239 MMKEPVTAITGITYERESIEQWLMKAKDCVCPVTKQPLPRSSQYLTPNHTLRRLIQAWSEANIITNNASRTSHGGGGGGVHEQVPAALDIEKLVKDLKVPRRNQRALEKLHGFAMESERNRASIAEAGVANAMVMLINHSFKQGKTMMCLEEALTILHVTWNIPCRTNMKALVGENLDFINSLTWILNNNNNNVKIVNQAMPLLKLTIENTNPTILGNLNFQFFKEMVRVLGKRTISQQALKSTLQILTETCPLGKNRKRIVESGAVTELIELELEKPEKNISELIFNLLAHLCSCAEGREMFLKHAAAIAMVSKRILRVSSATDDRAVHILLMIGKYSGSNDIVLEMLRVGAVSKLCMVMQADCASYLKEKAREILRLHSKVWSNSPCIQVYLLTRYQR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30235g00006 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 66 IPR013083 -
Stsc30235g00006 400 ProSiteProfiles U-box domain profile. 1 65 IPR003613 GO:0004842|GO:0016567
Stsc30235g00006 400 PANTHER WDSAM1 PROTEIN 1 391 IPR045185 GO:0061630
Stsc30235g00006 400 SUPERFAMILY ARM repeat 104 378 IPR016024 -
Stsc30235g00006 400 Gene3D - 88 382 IPR011989 -
Stsc30235g00006 400 Pfam U-box domain 1 62 IPR003613 GO:0004842|GO:0016567
Stsc30235g00006 400 SUPERFAMILY RING/U-box 1 62 - -
Stsc30235g00006 400 SMART Ubox_2 1 58 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30235g00006 Stsc-Chr30235 42198 44128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30235g00006 1 398 U-box Gene Family AT2G35930 37.255 4.70e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30235g00006 - - gmx:100811293 498.819