Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30235g00001 ATGGCAACGTACTTTGATGGCGGCAACAATAATAACAACAGCAGTAGCTCAGATATTCATCATGGCAATCATCAATCTTCCGCAGAAGGAGGGGGATTACAGACACTGTTCCTCATGAATCCAAACAACTACGCACCTTTCTCCTCTGACACCGCACAAAATCCAACACCAAACATGATCTTTCTCAATTCCAACAATACTACTACTTCTTCTACTAGTCCCCACGCGCTCAACCTCGCGAGTCTCTCTCACGCGCCACCTTCCCAACAACAACTTATACCCGCTGCCAACGAGATCTCTGGCTTCCATGGCTTTGTGGGGCCCATGGCTGCTCCGCCACGTGTTCATCACTATAATTGGGGTTCATCAGTTATAGATCAAGCCTTCCCTTCTTCTTCTGCCGTTGTTGCTGCAACCGTGACGGTTGTTCCGCGTAATAATAATTCGGAACATTCCGTCACGGCTGCTACAACAGCAGAGATGGGATTTCATAGGCCGGGAGCCCATGAATTCCGCCATCATCGTCATCATTCACAAGGATTGTCGCTTACTCTTTCCTCTCAGCAAGAACTTGGTTTGAGAAGTATGCATAGTTTTGTACTGGGTTCCAAGTTTCTGAAAGCAGCACAGGAGCTTCTAGATGAAGCTGTTAGCGTGGGTAACGATGATGATAAGAGGGATTGTTATTATTCCAACAATAAAGAGAAGATGAAAGGGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAACGTTGAATCCACATCCGGGGTTGTTGGTGGTGGCAACGACGGCGAAAATAGCGGTGTTAATAACAATAATATTAACAAGCAAGAAGGAAGTGAACTCAACACGGCTCAAAGACAAGAACTTCAAATGAAGAAGTCCAAGCTTGTTACCATGCTTGATGAGGTTGAGCAAAGATACAAAGAGTACAACCAACAAATGCAAATTGTGATGTCATCATTTGAAGAAGCAGCTGGTTATGGAGCTGCAAGGGCATACACTTCACTTGCATTGAAGACAATCTCAAAGCAGTTCCGGTGCTTGAAGGATGCAATTTCTTCGCAAATCAAGGCGGCCGGCAAGGCGCTAGGAGATGGAGATTGCATTGGAATTAAAGTCGAGGGTTCGAGGCTTAGATTCGTCGATCACCATCTCCGGCAACAAAGGGCACTTCAGCAGCTCGGAATGGCACAACACAATGCTTGGAGACCGCAAAGAGGATTGCCTGAACGAGCTGTTTCCATTCTTCGAGCTTGGCTTTTCGAACACTTTCTTCACCCATATCCAAAGGATTCCGATAAAGTTTTGCTTGCAAAACAAACTGGACTTACTCGGAGCCAGGTATCAAACTGGTTTATAAATGCCCGAGTTAGGCTATGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAATCAAGGATCAAGAACACAATAACAACAACAATGATGATGATGACATTGGCAGCACCAACAAGAAAAAGAAGAAGCTAATAAGAGAATCATCATTATCAAACAATAATGAATTATGGTCATCATCATCATCACAGTTAGAACAACCATCATCTAGTAGTGCCTTTAGACTTGACCACTTAAACACCAACCCAAACATTATCTCACCAAACTACTCCAACAACAATTCAATCTCAACATCTCCATTGAATCCTAGGAATAATCCTCATCATCACGAGATCATGAACTCTCCAGGTAGCATCCTTTCAGTGGACATGGAAATGAAGCCTATAAGAGAAACTAATAGCAACATAGAACCCAACAACAACAACATAAAGTTTGGAATTGAAATAAGGAACCCTAATAAAGACGGTTACCCTTTGATGGCTTCTTTTGGGAACGAAAACCACGAGGTGGTCGACGGTGGAAGTAGTGGTTATGGAGGCAGTGCATTCTCCATGGAAGACATTGGAAGGTTCCATCAACAGTTGGTGGCTCCAAGGTTCCATGGGAATGGTGTTTCACTCACTCTAGGGCTTCCACCAAGTGAGAACAACAACAACAACAACAACTTTCAATCTCAACAAGGGTTTCTCTCTTCACAGAACATGCATTTGGGAGGGAAGATTCATCATCATCACAATATTGGAGCAGCAACCAATAATAACGATGATGATGATCCAGGGACAAGCTATGATCATAACAACAACATTATTGATGACATGCAAAACAGCAAGAGGTTTGCTTCTCATCAATTGTTGCGGGATTTTGTGGCCTAG 2256 0.4251 MATYFDGGNNNNNSSSSDIHHGNHQSSAEGGGLQTLFLMNPNNYAPFSSDTAQNPTPNMIFLNSNNTTTSSTSPHALNLASLSHAPPSQQQLIPAANEISGFHGFVGPMAAPPRVHHYNWGSSVIDQAFPSSSAVVAATVTVVPRNNNSEHSVTAATTAEMGFHRPGAHEFRHHRHHSQGLSLTLSSQQELGLRSMHSFVLGSKFLKAAQELLDEAVSVGNDDDKRDCYYSNNKEKMKGNNNNNNNNNNNNNNNNNNNVESTSGVVGGGNDGENSGVNNNNINKQEGSELNTAQRQELQMKKSKLVTMLDEVEQRYKEYNQQMQIVMSSFEEAAGYGAARAYTSLALKTISKQFRCLKDAISSQIKAAGKALGDGDCIGIKVEGSRLRFVDHHLRQQRALQQLGMAQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVLLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEHNNNNNDDDDIGSTNKKKKKLIRESSLSNNNELWSSSSSQLEQPSSSSAFRLDHLNTNPNIISPNYSNNNSISTSPLNPRNNPHHHEIMNSPGSILSVDMEMKPIRETNSNIEPNNNNIKFGIEIRNPNKDGYPLMASFGNENHEVVDGGSSGYGGSAFSMEDIGRFHQQLVAPRFHGNGVSLTLGLPPSENNNNNNNFQSQQGFLSSQNMHLGGKIHHHHNIGAATNNNDDDDPGTSYDHNNNIIDDMQNSKRFASHQLLRDFVA 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30235g00001 751 MobiDBLite consensus disorder prediction 481 567 - -
Stsc30235g00001 751 MobiDBLite consensus disorder prediction 221 293 - -
Stsc30235g00001 751 SUPERFAMILY Homeodomain-like 412 477 IPR009057 -
Stsc30235g00001 751 CDD homeodomain 411 472 IPR001356 GO:0003677
Stsc30235g00001 751 SMART HOX_1 411 475 IPR001356 GO:0003677
Stsc30235g00001 751 MobiDBLite consensus disorder prediction 481 510 - -
Stsc30235g00001 751 SMART prehox3 194 363 IPR006563 -
Stsc30235g00001 751 MobiDBLite consensus disorder prediction 234 293 - -
Stsc30235g00001 751 Coils Coil 295 329 - -
Stsc30235g00001 751 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 509 - -
Stsc30235g00001 751 MobiDBLite consensus disorder prediction 511 567 - -
Stsc30235g00001 751 FunFam BEL1-like homeodomain protein 9 414 476 - -
Stsc30235g00001 751 Pfam Homeobox KN domain 428 467 IPR008422 GO:0003677|GO:0006355
Stsc30235g00001 751 MobiDBLite consensus disorder prediction 706 726 - -
Stsc30235g00001 751 MobiDBLite consensus disorder prediction 1 35 - -
Stsc30235g00001 751 Pfam Associated with HOX 200 362 IPR006563 -
Stsc30235g00001 751 Gene3D - 414 476 - -
Stsc30235g00001 751 ProSiteProfiles 'Homeobox' domain profile. 408 471 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30235g00001 Stsc-Chr30235 12516 18899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30235g00001 1 751 Homeobox Transcription Factor Family AT2G35940 38.335 1.76e-117 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc30235g00001 POX 2.1e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30235g00001 - - aip:107629786 685.256