Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30234g00042 ATGTCCAAACCTTGGGGCAACATCGGAAATTGGGCGGCGGAAGCCGAGCGCGCCGAAGCGGAGGAGAAGGAGGCCGCCGCCGCCGCTGCCTCCGCAACCTCGCAGAGTTTCCCCAGCCTCAAGGAGGCCGTTAACACCAAGCCTAAGAAGAAGAAGATGACGCTGTCGGAGTTCAGTGGCTACGCCTCCGGTGGCGGTGGTGGTGTCGCCGCGTTGGAGTCCAAGGGGCTTACGCCGGACGAGATGCTTCGTCTCCCGACGGGGCCGAAGGAGCGCTCCGCGGAGGAAATGCAGTTCAACCGGCTCGGCGGCGGGTTCTCATCCTACGGCCGCTCCGGTGGGTCTTCAATGGGCCGCTCGAGGGACCGCGAAGGCAACGGCGAGGGTTCCTGGGGCGGAGGGAGGAGATCGTATGGAGGATTGGACGATGAGCGCAGGGGTCCGAGTCCTAGGGTTTCGGATATCGATCAGCCTTCGAGGGCTGACGAGGTGGATAACTGGGCCTCGATGAAGAAACAGCCCTCGTCGTTCGATTCCGGGCGGCAGAATCGATATGGTTCTCTTGGAAGCGGCGGAGGTGGAGGTGGCATTGGCGGCGGAGGCGGAGGTGGCGGATTTGGTGGTAGCTCTAGAGCTGATGAGGTGGATAACTGGACATTTGGGAAGAAGCCTATTCCCGCCAGATCTTCAACGTTTGGTTCCGGTTTTCGCGATTCTGGTGGGGAGCAAGATCGCTGGGCGAGGGGACCACCACGAGGGGAGCAACCGGATCGCTGGTCGAGAGGACCAGTCCGCGAGGAGCGGCCCAAGTTGGTGTTGGAACCACCGAGAGGCGATGGTTCTGCAAATGAAGCTCCGGTGGTGAAAACTAATAAGCCGAACCCTTTCGGTGCCGCGAGGCCGAGGGAGGAGGTTCTGGCGGAGAAGGGAGTGGATTGGAAGAAGCTGGAAACAGATTTGGAGGCGAAGAAGTCTCCTAGTGGACCTTCCAGTGCACACTCCAGCAGGCCTTCCAGCGCCCAATCGAATCGCTCTGAAAGTCAGGGGTTGCAGCAGCAGGGACCTGCTGAAGCTGTGGCGAAGCCGAAGCCAAAGGTGAATCCTTTTGGCGACGCCAAACCCCGGGAGCTTTTGCTGAAGGAACGAGGTATTGATTGGCGAAAGCTTGATCTTGATTTGGAGCATCGCGCTGTGGACAGGCCTGAGACTGAGGAAGAAAAAATATTAAAAGAAGAAATTGATAATTTAAAGAAGGAAGTTGAGAAAGAGTCTGCTATAAATAAAGAATCTTCAAATGAGACTGATGCAGAACAAAGCAGTACACAGGCAATATTATTGCAGAAAGAGAGGGAGCTGGAACAACTTATCCGTGACTTGGATGACAAAGTTCGTTTTGGTCAGAAAGCTGTTGAAAGGCCGGGTTCATCGGCAGGAAGGTCTGTCGGTTATTCTGATAGGCCACATTCCCGATCAAGCTCAATCTCAATTGAGGATTCTAGAGGCGAGTCTGCAGACAGACCTCGATCACGTGGCACTGGTGATACGTGGGCATATCCAAATGATGACCAAAGATCATATCAAGGAAGCAGGGACAGGAGAGGGTTTTTGAGTAACAGAGATAATAGGTCAAGGTCAAGAGAGAGATGGTGA 1650 0.5552 MSKPWGNIGNWAAEAERAEAEEKEAAAAAASATSQSFPSLKEAVNTKPKKKKMTLSEFSGYASGGGGGVAALESKGLTPDEMLRLPTGPKERSAEEMQFNRLGGGFSSYGRSGGSSMGRSRDREGNGEGSWGGGRRSYGGLDDERRGPSPRVSDIDQPSRADEVDNWASMKKQPSSFDSGRQNRYGSLGSGGGGGGIGGGGGGGGFGGSSRADEVDNWTFGKKPIPARSSTFGSGFRDSGGEQDRWARGPPRGEQPDRWSRGPVREERPKLVLEPPRGDGSANEAPVVKTNKPNPFGAARPREEVLAEKGVDWKKLETDLEAKKSPSGPSSAHSSRPSSAQSNRSESQGLQQQGPAEAVAKPKPKVNPFGDAKPRELLLKERGIDWRKLDLDLEHRAVDRPETEEEKILKEEIDNLKKEVEKESAINKESSNETDAEQSSTQAILLQKERELEQLIRDLDDKVRFGQKAVERPGSSAGRSVGYSDRPHSRSSSISIEDSRGESADRPRSRGTGDTWAYPNDDQRSYQGSRDRRGFLSNRDNRSRSRERW 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30234g00042 549 Coils Coil 406 433 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 431 445 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 491 509 - -
Stsc30234g00042 549 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 549 IPR010433 GO:0003743
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 525 549 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 241 274 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 302 322 - -
Stsc30234g00042 549 Pfam Plant specific eukaryotic initiation factor 4B 1 532 IPR010433 GO:0003743
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 138 167 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 169 186 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 324 354 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 414 445 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 414 430 - -
Stsc30234g00042 549 Coils Coil 13 35 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 1 377 - -
Stsc30234g00042 549 MobiDBLite consensus disorder prediction 463 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30234g00042 Stsc-Chr30234 222100 226491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30234g00042 1 549 Eukaryotic Initiation Factors Gene Family AT3G26400 54.211 3.07e-143 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30234g00042 - - aip:107631697 738.028